Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40227
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09160.2 68414.m01023 protein phosphatase 2C-related / PP2C-r...    28   5.2  
At1g09160.1 68414.m01022 protein phosphatase 2C-related / PP2C-r...    28   5.2  
At4g18200.1 68417.m02705 purine permease family protein similar ...    27   9.2  

>At1g09160.2 68414.m01023 protein phosphatase 2C-related /
           PP2C-related similar to GB:AAC16260
          Length = 428

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 643 FVMFGNAALKVKCQYYFFIKIRCKNI 566
           FV +G AAL  K + YF IK  C+ +
Sbjct: 33  FVKYGQAALAKKGEDYFLIKTDCERV 58


>At1g09160.1 68414.m01022 protein phosphatase 2C-related /
           PP2C-related similar to GB:AAC16260
          Length = 428

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 643 FVMFGNAALKVKCQYYFFIKIRCKNI 566
           FV +G AAL  K + YF IK  C+ +
Sbjct: 33  FVKYGQAALAKKGEDYFLIKTDCERV 58


>At4g18200.1 68417.m02705 purine permease family protein similar to
            purine permease [Arabidopsis thaliana] GI:7620007;
            contains Pfam profile PF03151: Domain of unknown
            function, DUF250
          Length = 1128

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 147  ILNSVYLSSWLLANLILST---NTTNHNNVHISIHLLCQIG 34
            I+NS++L +   A L+++T   NTTN + V   I  +C IG
Sbjct: 921  IVNSLFLLTVSSALLVVNTDSENTTNVSRVQYVIGFICTIG 961


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,531
Number of Sequences: 28952
Number of extensions: 250537
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)