Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40226
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   134   1e-32
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    33   0.044
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    27   2.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   2.9  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   6.7  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    25   6.7  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  134 bits (324), Expect = 1e-32
 Identities = 62/84 (73%), Positives = 74/84 (88%)
 Frame = +3

Query: 3   ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGD 182
           E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNLE D VG V+FGND+L++EG+
Sbjct: 55  ESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLVREGE 114

Query: 183 IVKRTGAIVDVPVGEQILGRVASA 254
           +VKRT  IVDVPVGE +LGRV  A
Sbjct: 115 VVKRTRHIVDVPVGEALLGRVVDA 138



 Score = 91.9 bits (218), Expect = 7e-20
 Identities = 41/57 (71%), Positives = 50/57 (87%)
 Frame = +1

Query: 343 VCASPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDERR 513
           VC  PMQTG+KA+DS+VPIGRGQRELIIGDRQTGKTA+A+DTI+N +R+N   DE +
Sbjct: 170 VC-EPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNHKRWNNSSDESK 225



 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 23/38 (60%), Positives = 33/38 (86%)
 Frame = +3

Query: 510 KKLYCIYVAIGQKTSTVAQIVKRLTDAGAINYTIIVSA 623
           KKLYC+YVA+GQK STVAQ+V++L +  ++ Y+IIV+A
Sbjct: 225 KKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAA 262



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = +2

Query: 254 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSV 349
           LGNPIDGKGPI T  R RV +KAPGI+PR SV
Sbjct: 139 LGNPIDGKGPIKTTERRRVQLKAPGILPRTSV 170


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 32.7 bits (71), Expect = 0.044
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 358 MQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 498
           ++TGIK VD L P  RG +  + G    GKT    + I N  + + G
Sbjct: 180 LETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGG 226



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 141 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 245
           + + G + L++ G  V  TG+ + +PVG   LGR+
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRI 141


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 283 WSLAINRVSQADATRPRICS 224
           WS A+N+V Q ++TR R+ S
Sbjct: 437 WSSAVNKVHQENSTRERVVS 456


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 331 HSPCVCASPMQTGI-KAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 480
           H P V     QT + + V   + +G G   +I+G R +GK+ L +D I+++
Sbjct: 549 HIPLVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVL-VDDILSR 598


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 244 TRPRICSPTGTSTIAP 197
           TRPR+ +P+ +ST+ P
Sbjct: 55  TRPRVSAPSSSSTVVP 70


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 358 MQTGIKAVDSLVPIGRGQR 414
           +QTGI ++D L  I RGQ+
Sbjct: 147 IQTGISSIDGLNSIARGQK 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,204
Number of Sequences: 5004
Number of extensions: 52584
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)