Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40226
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    31   0.56 
05_06_0148 + 25989595-25990956                                         29   2.3  
02_04_0275 - 21469391-21470650                                         29   3.0  
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210...    28   5.2  
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729...    28   5.2  
01_01_1195 - 9567023-9567789,9567871-9568120                           28   6.9  
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214...    27   9.2  

>06_01_0090 -
           724296-724532,724756-724938,725038-725088,725520-725639,
           725738-725840,726106-726264,726728-726846,726891-727004,
           727119-727277,727404-727451,728464-728640,729064-729116,
           729549-729661,729793-729873,729966-730081,730786-730905,
           732321-732429,732593-732770,732852-732920,733102-733233,
           733657-733766,733843-734003,734081-734171,734258-734355,
           734499-734619,734732-734892,734985-735090,735142-735236,
           735828-735852,736008-736084,736196-736282,736372-736421,
           736558-736639,736735-736795,737064-737116,737206-737395,
           737472-737595,737860-737962,738064-738156,740344-740422,
           740508-740584,740915-741043,742614-742731,742816-742913,
           743457-743546,744998-745123,745238-745351,745488-745611,
           745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = -2

Query: 605 VVDGTSISQSLHNLSYS-RRLLSNGNINAVQLLLSSSPLLNRCWLMIVSI 459
           +VD T++  +L NL YS   L+S+GN NA+ +L   +P+L   +LM + I
Sbjct: 696 LVDPTNVIVTLRNLHYSWHDLVSSGNKNALTILSLWAPVL-AIYLMDIHI 744


>05_06_0148 + 25989595-25990956
          Length = 453

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 135 VGVVVFGNDK-LIKEGDIVKRTGAIVDVPVGEQILGRVASAWE 260
           +GVV+ G D+ L+K  ++ K+   ++D   G+++ GR+A A E
Sbjct: 384 LGVVMDGYDEELVKAEEVEKKVRLVMDSDEGKKLRGRLAMAKE 426


>02_04_0275 - 21469391-21470650
          Length = 419

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 99  GLRRTPPSPQPGCSSSHKHERYHHQCSRH 13
           G RRT  +   G SS+H H RY  Q SRH
Sbjct: 345 GTRRTAMATDVGTSSNH-HVRYRFQDSRH 372


>04_04_1156 -
           31319747-31320085,31320556-31320706,31320795-31321026,
           31321121-31321331,31321646-31321764,31321835-31322032,
           31322163-31322364,31322456-31322832,31322937-31323007,
           31326264-31326329,31326414-31326479,31326761-31326835,
           31326944-31327018,31327115-31327186,31327683-31327904,
           31328012-31328083,31328425-31328496,31329410-31329481,
           31329716-31329896,31332132-31332237
          Length = 992

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 153 GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVASA 254
           GN+   K G    + G IV V VG  ILG +A A
Sbjct: 590 GNNNTSKAGVSTSKAGVIVGVVVGVTILGLIALA 623


>03_02_0308 -
           7297228-7298008,7298495-7298576,7298612-7298669,
           7298723-7298835,7298924-7299034,7299480-7299597,
           7299706-7299809,7300570-7300665,7301806-7302307
          Length = 654

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -1

Query: 144 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSSSHKHERY--HHQCS 19
           PH   Q P   P P      PP  +P  S+SH H R+  HH  S
Sbjct: 110 PHHQQQGPGASPSP---PPPPPRGRPSFSASHSHHRHGGHHHRS 150


>01_01_1195 - 9567023-9567789,9567871-9568120
          Length = 338

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 84  PPSPQPGCSSSHKHERYHHQCS 19
           PP PQP  +  H H RY  Q S
Sbjct: 176 PPPPQPVVALHHHHHRYSQQYS 197


>03_05_0674 +
           26619579-26619658,26620020-26620746,26620999-26621486,
           26621746-26621902,26621975-26621998
          Length = 491

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 364 SA*VTHRHTGNDTWRLNTDPHTGFRVDWSLAINRVSQADATRPRICSP 221
           +A V  R  G D  R  +   +G R+D S+A N      +  PR  SP
Sbjct: 333 TARVARRRGGRDPGRERSSSMSGGRLDTSVANNPTGDRTSHAPRSASP 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,560,333
Number of Sequences: 37544
Number of extensions: 396996
Number of successful extensions: 1053
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)