Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40226
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 35 0.047
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 29 2.3
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 29 3.1
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_54001| Best HMM Match : Macscav_rec (HMM E-Value=0.87) 28 7.1
SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 7.1
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 28 7.1
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 27 9.4
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0) 27 9.4
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 27 9.4
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 27 9.4
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0) 27 9.4
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +1
Query: 355 PMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDE 507
PM TGIKAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQ+RFN G DE
Sbjct: 83 PMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDGVDE 133
Score = 94.7 bits (225), Expect = 5e-20
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +3
Query: 108 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVASA 254
MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRV A
Sbjct: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDA 49
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +3
Query: 507 EKKLYCIYVAIGQKTSTVAQIVKRLTDAGAINYTIIVSA 623
EKKLYCIYVAIGQK STVAQ+VK++TDA A+ YTIIVSA
Sbjct: 145 EKKLYCIYVAIGQKRSTVAQLVKKMTDADAMKYTIIVSA 183
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2
Query: 254 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVR 352
LGNPIDGKGP +R RVG+KAPGIIPR SV+
Sbjct: 50 LGNPIDGKGPTGG-TRARVGVKAPGIIPRTSVK 81
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 358 MQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 498
++TGIK VD L P +G + + G GKT L ++ I N + + G
Sbjct: 196 LETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 242
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 254 LGNPIDGKGPIDTKSRMRVGIKAPGII 334
+G PID +GP++T R + +AP +
Sbjct: 161 IGEPIDERGPVETDKRAAIHAEAPEFV 187
>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1659
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 233 DLLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVRF 123
D LSDG+ ++T N F D+++ + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208
>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 313
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 546 KTSTVAQIVKRLTDAGAINYTIIVSA 623
K ST+A +V++L + GA+ TI+V+A
Sbjct: 1 KQSTIANVVRKLEENGALANTIVVAA 26
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 364 TGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 477
TGIK +D + P +G + + G GKT L I +IN
Sbjct: 5 TGIKVIDLIEPYAKGGKIGLFGGAGVGKTVL-IQELIN 41
>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 78 SPQPGCSSSHKHERYHHQCSRH 13
SP P SS H H R H+ C H
Sbjct: 61 SPLPLSSSHHHHHRRHYLCHHH 82
>SB_54001| Best HMM Match : Macscav_rec (HMM E-Value=0.87)
Length = 528
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = +3
Query: 132 NVGVVVFGN--DKLIKEG----DIVKRTGAIVDVPVGEQILGRVAS 251
NV +VF N KL+K+G D+V G VD V E ILG + S
Sbjct: 51 NVEKLVFLNRASKLVKDGSRYTDVVAMVGRTVDRCVNEAILGELMS 96
>SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 84 EFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 245
++ +K + ++P G+VV G D + E D+ K I+ V RV
Sbjct: 36 DYEGQIKKLMQYIDPSLDGIVVAGGDGTLLEADVSKIPIGIIPVGTNNTFFNRV 89
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 27.9 bits (59), Expect = 7.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 69 PGCSSSHKHERYHHQCSRHDQSL 1
PG H+H R+HH +H++ +
Sbjct: 922 PGKKHKHRHRRHHHHRRQHNRKI 944
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 381 NSLDTSLHR*RTDTRGMIPGALIPTLIRDFVSIGPLPS-IGFPKRMLHAQG 232
NSL SL+ +TR ++ L P +S LPS I FP M+ A G
Sbjct: 491 NSLPKSLNASEYNTRDLLTDLLQPKYFHTSISSSVLPSFICFPSYMIPAFG 541
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 572 HNLSYSRRLLSNGNINAVQLLLSSSP 495
H S RRL NGN N ++L L S P
Sbjct: 560 HQGSNGRRLKRNGNPNTIELQLFSEP 585
>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 722
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 263 GFPSGCYTPKDLLS--DGNVYDSTSTLDNISFFDK 165
G G TP D +GN Y +++TL +SFF K
Sbjct: 255 GLLGGVVTPNDAKCHLEGNTYAASTTLTLVSFFGK 289
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 99 GLRRTPPSPQPGCS 58
GL PPSPQPGC+
Sbjct: 724 GLPPPPPSPQPGCA 737
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 351 RTDTRGMIPGALIPTLIRDFVSIGPLPSIGFPKRMLHAQGSA 226
++DTR P PT + +S G LP+ P++ L GSA
Sbjct: 64 KSDTRNRRPPPPPPTEAEESISRGSLPAPPVPQKGLPRSGSA 105
>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 646
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 111 ALNLEPDN-VGVVVFGNDKLIKEGDIVKR 194
ALN+ N +G + N K++ EGDIVKR
Sbjct: 248 ALNITNSNSLGEIFTRNGKMLVEGDIVKR 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,740,392
Number of Sequences: 59808
Number of extensions: 419818
Number of successful extensions: 1250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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