Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40226
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...   150   7e-37
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...   150   7e-37
AL023815-2|CAD92383.1|  146|Caenorhabditis elegans Hypothetical ...   104   6e-23
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    97   1e-20
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    33   0.13 
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    29   2.0  
U64858-4|AAB18282.2|  151|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    29   3.6  

>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score =  150 bits (364), Expect = 7e-37
 Identities = 71/84 (84%), Positives = 79/84 (94%)
 Frame = +3

Query: 3   ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGD 182
           ETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGD
Sbjct: 28  ETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGD 87

Query: 183 IVKRTGAIVDVPVGEQILGRVASA 254
           IVKRTGAIVDVPVG+ +LGRV  A
Sbjct: 88  IVKRTGAIVDVPVGDGLLGRVVDA 111



 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 43/53 (81%), Positives = 49/53 (92%)
 Frame = +1

Query: 355 PMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDERR 513
           PM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQ+RFN   D+++
Sbjct: 146 PMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDAGDDKK 198



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 32/39 (82%), Positives = 38/39 (97%)
 Frame = +3

Query: 507 EKKLYCIYVAIGQKTSTVAQIVKRLTDAGAINYTIIVSA 623
           +KKL+CIYVA+GQK STVAQIVKRLTDAGA++YTI+VSA
Sbjct: 197 KKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSA 235



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +2

Query: 254 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVR 352
           LGNPIDGKGPI    R RV +KAPGIIPR+SVR
Sbjct: 112 LGNPIDGKGPIANARRSRVEVKAPGIIPRLSVR 144


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score =  150 bits (364), Expect = 7e-37
 Identities = 71/84 (84%), Positives = 79/84 (94%)
 Frame = +3

Query: 3   ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGD 182
           ETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGD
Sbjct: 55  ETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGD 114

Query: 183 IVKRTGAIVDVPVGEQILGRVASA 254
           IVKRTGAIVDVPVG+ +LGRV  A
Sbjct: 115 IVKRTGAIVDVPVGDGLLGRVVDA 138



 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 43/53 (81%), Positives = 49/53 (92%)
 Frame = +1

Query: 355 PMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDERR 513
           PM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQ+RFN   D+++
Sbjct: 173 PMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDAGDDKK 225



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 32/39 (82%), Positives = 38/39 (97%)
 Frame = +3

Query: 507 EKKLYCIYVAIGQKTSTVAQIVKRLTDAGAINYTIIVSA 623
           +KKL+CIYVA+GQK STVAQIVKRLTDAGA++YTI+VSA
Sbjct: 224 KKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSA 262



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +2

Query: 254 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVR 352
           LGNPIDGKGPI    R RV +KAPGIIPR+SVR
Sbjct: 139 LGNPIDGKGPIANARRSRVEVKAPGIIPRLSVR 171


>AL023815-2|CAD92383.1|  146|Caenorhabditis elegans Hypothetical
           protein H28O16.1b protein.
          Length = 146

 Score =  104 bits (249), Expect = 6e-23
 Identities = 48/55 (87%), Positives = 53/55 (96%)
 Frame = +3

Query: 3   ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKL 167
           ETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+
Sbjct: 55  ETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKI 109


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +3

Query: 3   ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGN 158
           ETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVV GN
Sbjct: 55  ETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVLGN 106



 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 43/53 (81%), Positives = 49/53 (92%)
 Frame = +1

Query: 355 PMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDERR 513
           PM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQ+RFN   D+++
Sbjct: 138 PMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDAGDDKK 190



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 32/39 (82%), Positives = 38/39 (97%)
 Frame = +3

Query: 507 EKKLYCIYVAIGQKTSTVAQIVKRLTDAGAINYTIIVSA 623
           +KKL+CIYVA+GQK STVAQIVKRLTDAGA++YTI+VSA
Sbjct: 189 KKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSA 227



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +2

Query: 254 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVR 352
           LGNPIDGKGPI    R RV +KAPGIIPR+SVR
Sbjct: 104 LGNPIDGKGPIANARRSRVEVKAPGIIPRLSVR 136


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 364 TGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 498
           TGIK VD L P  +G +  + G    GKT L ++ I N  + + G
Sbjct: 194 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 238


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 572 EEID*CWCHQLHNHCV 619
           E++D C CH+ +NHCV
Sbjct: 308 EQVDLCLCHKEYNHCV 323


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 572 EEID*CWCHQLHNHCV 619
           E++D C CH+ +NHCV
Sbjct: 270 EQVDLCLCHKEYNHCV 285


>U64858-4|AAB18282.2|  151|Caenorhabditis elegans Hypothetical
           protein C16D9.3 protein.
          Length = 151

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 84  PPSPQPGCSSSHKHERYHHQCSRHDQSL 1
           PP  Q  C      ER H  C R+DQS+
Sbjct: 96  PPGSQLKCHFDKSRERLHANCYRYDQSV 123


>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
           protein C38D9.5 protein.
          Length = 1213

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 45  VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 221
           + GL  +Q+  + E   G+K +  +L   +       +DK LIK G I+ +   I  VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690

Query: 222 GEQILGR 242
              ++G+
Sbjct: 691 DTSLIGK 697


>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
           protein C38D9.5 protein.
          Length = 1213

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 45  VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 221
           + GL  +Q+  + E   G+K +  +L   +       +DK LIK G I+ +   I  VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690

Query: 222 GEQILGR 242
              ++G+
Sbjct: 691 DTSLIGK 697


>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 84  PPSPQPGCSSSHKHERYHHQCSRHDQSL 1
           PP  Q  C   H   +Y+  C R+DQS+
Sbjct: 285 PPGSQSICIFLHDWNKYYADCFRYDQSI 312


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 99  LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 245
           L G  + LE D   + V+     +  GD V RTG  + V +G  I+G +
Sbjct: 39  LVGEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSI 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,460
Number of Sequences: 27780
Number of extensions: 309199
Number of successful extensions: 854
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)