Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40226
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.79 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 328 TWRLNTDPHTGFRVDWSLAINR 263
           T +L+TDP+T F+V+ S  I R
Sbjct: 680 TEKLSTDPNTHFQVNQSHGIKR 701


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 245 YTPKDLLSDGNVYDSTSTLDNISFF 171
           YTP+ L   GNV + +S   N  F+
Sbjct: 356 YTPEGLNMLGNVIEGSSDSINTKFY 380


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 245 YTPKDLLSDGNVYDSTSTLDNISFF 171
           YTP+ L   GNV +  S   N  F+
Sbjct: 356 YTPEGLNMLGNVIEGNSDSINTKFY 380


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 296 ISCRLVPCHQ*GFPSGCYTPKDLLSDGN 213
           I+C L  CH  G       PK++L   N
Sbjct: 164 ITCALQFCHNAGIVHADVKPKNILMSKN 191


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 66  GCSSSHKHERYHHQCSRHDQS 4
           G  S   H++ HH  S H Q+
Sbjct: 804 GDQSQPPHQQLHHHQSTHPQA 824


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 144 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSSS 52
           PH   Q P  G  P   +  PP   PG   S
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,782
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)