Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40226
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 126 2e-29
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 34 0.067
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 34 0.067
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 34 0.067
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 29 2.5
At1g16270.1 68414.m01948 protein kinase family protein contains ... 29 2.5
At3g58920.1 68416.m06566 F-box family protein contains F-box dom... 28 4.4
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 28 5.8
At2g41290.1 68415.m05099 strictosidine synthase family protein s... 28 5.8
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 5.8
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 27 7.7
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 126 bits (303), Expect = 2e-29
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +3
Query: 3 ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGD 182
E GRV+S+GDGIA+VYGL IQA EMV F++G+KGMALNLE +NVG+VVFG D IKEGD
Sbjct: 299 EIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGD 358
Query: 183 IVKRTGAIVDVPVGEQILGRVASA 254
+VKRTG+IVDVP G+ +LGRV A
Sbjct: 359 LVKRTGSIVDVPAGKAMLGRVVDA 382
Score = 85.8 bits (203), Expect = 2e-17
Identities = 38/46 (82%), Positives = 44/46 (95%)
Frame = +1
Query: 355 PMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFN 492
PMQTG+KAVDSLVPIGRGQREL+IGDRQTGKT +AIDTI+NQ++ N
Sbjct: 417 PMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIAIDTILNQKQIN 462
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/36 (55%), Positives = 30/36 (83%)
Frame = +3
Query: 516 LYCIYVAIGQKTSTVAQIVKRLTDAGAINYTIIVSA 623
+YC+YVAIGQK STV Q+++ L +A A+ Y+I+V+A
Sbjct: 472 MYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAA 507
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 254 LGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSV 349
+G PIDGKG + + RV +KAPGI+ R SV
Sbjct: 383 MGVPIDGKGALSDHEQRRVEVKAPGILERKSV 414
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 34.3 bits (75), Expect = 0.067
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 358 MQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 498
+ TGIK VD L P RG + + G GKT L ++ I N + + G
Sbjct: 208 LATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 254
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 141 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 245
+ + G + L++ G V TGA + VPVG LGR+
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRI 169
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 34.3 bits (75), Expect = 0.067
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 358 MQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 498
+ TGIK VD L P RG + + G GKT L ++ I N + + G
Sbjct: 211 LATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 257
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 141 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 245
+ + G + L++ G V TGA + VPVG LGR+
Sbjct: 139 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRI 172
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 34.3 bits (75), Expect = 0.067
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 358 MQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 498
+ TGIK VD L P RG + + G GKT L ++ I N + + G
Sbjct: 208 LATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 254
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 141 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 245
+ + G + L++ G V TGA + VPVG LGR+
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRI 169
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 81 PSPQPGCSSSHKHERYHHQCSRH 13
PSP P S H H +HH H
Sbjct: 321 PSPSPSPHSKHHHHHHHHHHHHH 343
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 257 PSGCYTPKDLLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVR 126
PS Y KDL S + L+ I F D+L++ + H H+++
Sbjct: 357 PSPMYL-KDLYSCSKGNTKSQHLETIEFEDRLLVNSFSHIHVMK 399
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 161 VITKYYHTHIVRFQVKGHSLEA 96
V+ YY TH+V++Q+ G L+A
Sbjct: 209 VLEIYYRTHVVKYQLPGEDLDA 230
>At3g58920.1 68416.m06566 F-box family protein contains F-box domain
Pfam:PF00646
Length = 470
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 504 IFTLVESLLVDDSINSQGSL 445
+FT+V+ L DDS+ +QGSL
Sbjct: 37 LFTIVQKLEFDDSVKNQGSL 56
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 144 VVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGR 242
V +G D +I DI+ TG++ VP G ++ G+
Sbjct: 207 VKYGKDNIITAKDIIIATGSVPFVPKGIEVDGK 239
>At2g41290.1 68415.m05099 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]; contains strictosidine synthase
domain PF03088
Length = 376
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 78 SPQPGCSSSHKHERYHHQCSR 16
S + GC H+H+R H C R
Sbjct: 91 SAREGCEGPHEHQRTEHVCGR 111
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -1
Query: 144 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSS---SHKHERYHH 28
P P P P P L PP+P P + HKH+R+HH
Sbjct: 148 PAPVSPPPVQAPSPISL---PPAPAPAPTKHKRKHKHKRHHH 186
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -2
Query: 608 CVVDGTSISQSLHNLSYSRRLLSNGNINAVQLLLSSSPLLNRCWLMIVSIARAVLP 441
C+ DG + Q N+S RR L N + +LSS WL + V+P
Sbjct: 202 CLQDGYGVPQ---NVSEGRRFLVQANARELAAVLSSGIQARSTWLSLSQPPPPVVP 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,413
Number of Sequences: 28952
Number of extensions: 298303
Number of successful extensions: 791
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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