Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40225
         (574 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   4.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 94  PHPRLQRSPCRLLRNPSRGQPGP 162
           PHP L   P  L  +P+   PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 94  PHPRLQRSPCRLLRNPSRGQPGP 162
           PHP L   P  L  +P+   PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 428  PSKPSVLSNSSTGVQPVSRSVSTTSHP 348
            P+KPS    S+T       + STT+ P
Sbjct: 1169 PTKPSYRPPSTTNHWQTKTTTSTTTRP 1195


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 491 WLAVCCTVVTSYPRM 447
           W  VC  VV  YPR+
Sbjct: 166 WREVCTFVVQVYPRL 180


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 525 LVGGLEACVCDLG 563
           L+GG  +C CDLG
Sbjct: 703 LMGGKWSCDCDLG 715


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +1

Query: 49  SAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPYPHR 204
           ++P K ++ L T     P        +  +  R +  P     +  PPYP+R
Sbjct: 440 NSPTKPYYKLKTANNKRPPSTELGTNIYTSSKRQRTSPQLSPMSSLPPYPNR 491


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 177 SPKPVRTWLPSRRITKKSAWTPLKA 103
           S K V+ W  +RR+  K    P  A
Sbjct: 157 SEKQVKIWFQNRRVKYKKEDLPAAA 181


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 506  VMASTWLAVCCT 471
            ++AST L +CCT
Sbjct: 1356 ILASTELNLCCT 1367


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 506  VMASTWLAVCCT 471
            ++AST L +CCT
Sbjct: 1356 ILASTELNLCCT 1367


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 506  VMASTWLAVCCT 471
            ++AST L +CCT
Sbjct: 1356 ILASTELNLCCT 1367


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 506  VMASTWLAVCCT 471
            ++AST L +CCT
Sbjct: 1356 ILASTELNLCCT 1367


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,842
Number of Sequences: 336
Number of extensions: 3291
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)