Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40224
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   4.1  
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    26   5.4  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.2  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -1

Query: 559 LSAAETDLRRV---RSFDRKDIEDSIKKEFSGSIEKGMLAIAKCVKSK 425
           LS    DL++    RSF+   ++D++K+    S ++   A+ +C++ +
Sbjct: 33  LSNGAVDLKKFIESRSFEITALQDAMKRSKESSAQRAFQALPRCLRRR 80


>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 296 LEECLLDVP*VDLGAAHHDADERLVVGADALHRVVQALSEET 421
           LEE  L+     L A+ +D D+   +    ++ V+ AL++ET
Sbjct: 10  LEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKET 51


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 306 ACLMSPRSISERLTTMRMSVLSLVPMPFIE*YRRSAKKPTLLFTHLAIASMPF 464
           A L   R+I +  T++ ++V  L+P+P  +  +  AK    + +H+    +PF
Sbjct: 102 AILKEKRNILQDKTSVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPF 154


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -1

Query: 421 GFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLEKYGKSLETWIADDTPEIT 242
           GF  E +     G     + L R       +D   + + + EKYG+S +T +  DT  + 
Sbjct: 172 GFIEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAEEYREKYGRS-QT-VVGDTSNVP 229

Query: 241 RRLC*P 224
           +RL  P
Sbjct: 230 QRLLLP 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,245
Number of Sequences: 5004
Number of extensions: 48863
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)