Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40222
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   3.2  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    26   4.2  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   4.2  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   7.4  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.7  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   9.7  

>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 341 NIA*YLIVSKNPLTHSKYINSYNSC 267
           N   Y++VS+N    S  ++SYN+C
Sbjct: 183 NFTNYILVSENATAGSNSLSSYNAC 207


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 406 DLFILLSSVYRLWWTG 453
           D+ ++L SVY+ WW G
Sbjct: 240 DIILVLESVYKDWWKG 255


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 356 TREMAEKTRRIGVSIVRISSFFCHLCI 436
           TRE+A++ +++ V++  + +  CH CI
Sbjct: 96  TRELAQQIQKVVVALGDLMNVECHACI 122


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -1

Query: 206 K*LCA*YTFKPILSSSSKVQMIGHFCRQTYLILQVSKLFCTKNNACC 66
           K +C   T   + + S+   ++  +C Q  L  Q+ +   T  + CC
Sbjct: 189 KVICPCVTLTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKCC 235


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 485 NNTVSASCKKQMYITRFNYHLLVLTYWHD 571
           NN    S +   YITR   +L +  YW D
Sbjct: 288 NNNYQLSEEALQYITRSRVNLWIAHYWKD 316


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 23  KFAILKPRI*MSSKYNTHYFWYKTAY 100
           +  +L     ++SKYN  +FW K A+
Sbjct: 139 RLRVLTQSFELTSKYNYRFFWNKYAF 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,565
Number of Sequences: 5004
Number of extensions: 55428
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)