Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40222
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)                    28   7.8  

>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 422  CHLCIACGGPENPNEGL*RHGNNTVSASCKKQMYI 526
            CHLCI+C   E+  E   R  N   S SC  ++ +
Sbjct: 5928 CHLCISCATIEDEGEYTCRASNPAGSCSCTAELIV 5962


>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
          Length = 339

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -1

Query: 167 SSSSKVQMIGHFCRQTYLI 111
           SS+ +V  IG+FCRQTY+I
Sbjct: 196 SSTGRVS-IGYFCRQTYII 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,353,141
Number of Sequences: 59808
Number of extensions: 405413
Number of successful extensions: 1247
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)