Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40222
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55440.1 68414.m06341 DC1 domain-containing protein contains ...    29   3.6  
At1g44920.1 68414.m05147 expressed protein                             28   6.4  
At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C...    27   8.4  

>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 152 VQMIGHFCRQTYLILQVSKLFCTKNNAC--CT 63
           V+ I HF  + YL LQ  K  C K+  C  CT
Sbjct: 329 VETIHHFSHEHYLKLQEKKTICEKDKYCVACT 360


>At1g44920.1 68414.m05147 expressed protein
          Length = 258

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 313 LLTIRY*AMLVGDAHTGNGRKDASHRRKYS*DLFILLSSVYRLW 444
           +L I + A+L     T + +KD ++R+  + +LF LL+S+ R W
Sbjct: 215 VLLIGWRALLFSVLPTESKKKDDTYRKGSAFELFELLTSLIRRW 258


>At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; identical to protein phosphatase 2C (GI:4587992)
           [Arabidopsis thaliana]
          Length = 390

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 440 KRYTDDRRMKRS*LYLRLCDASFLPFPVCASPTNI 336
           K YTDD  MKRS + +      F P P+  SPT++
Sbjct: 16  KNYTDDFTMKRS-VIMAPESPVFFPPPLVFSPTSV 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,466
Number of Sequences: 28952
Number of extensions: 272043
Number of successful extensions: 420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)