Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40221
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz...    28   1.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   2.7  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   3.6  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    26   3.6  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   4.8  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   4.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   6.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.4  

>SPAC824.06 |tim14||TIM23 translocase complex subunit
           Tim14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 287 KTEGFDLLSKECLALAREKLRDGGRRLG-AEFP-RGGEPSAARRMSAEMS 430
           + E   +LS     L R+K+++  RRL  A  P RGG P  A +++   S
Sbjct: 49  RAEAIQILSLNNRTLTRQKIKEAHRRLMLANHPDRGGSPYVASKVNEAKS 98


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 447 LFSVCSDISADIRLAADGSPPLGNSAPKRLPPSRSFSL 334
           L ++C+ I+A   LA +G+PP+     + +PP+R  S+
Sbjct: 207 LNNLCNQITA--LLARNGNPPIPMQKLQSMPPARLISI 242


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 449 YCFQYAQTFPPTSALQQTVLRL*ETQ-HPSVSLHRGVFPLPT 327
           Y FQYA  +P   AL     RL E + HP VS+H  V+P  T
Sbjct: 358 YVFQYA--YPGGLALT----RLYEIENHPQVSVHMDVYPCMT 393


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 432 SDISADIRLAADGSPPLGNSAPKRLPPSRSFSLANARHS 316
           S ISA +     G      S P++ PP+ +FS   AR++
Sbjct: 190 SQISASLAWLKTGGASAAPSNPRQPPPTSNFSNRKARYA 228


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 456 PPLGLAG*PGDVLSHEDVLLYECEKHPREHEWDEAAIGDRIQRDLS 593
           PP   A     + +   V  + CE +   H W  A +   ++RD+S
Sbjct: 768 PPAPGAAKAAVMFTPPKVHYFTCENNEELHRWSSAFLKATVERDMS 813


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 441 SVCSDISADIRLAADGSPPLGNS 373
           +V  + SA++ LAA GSP +G S
Sbjct: 262 AVAKNFSANVTLAAYGSPTMGES 284


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 AAHWPLPAIPGRIPI*SPKLKRKVSIYYQR 317
           AA+ PLP +P R    SP  +R+    Y+R
Sbjct: 172 AANEPLPEVPSRFRSRSPPARRRYRDDYRR 201


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 460  HLDLPGNPVTCYHMK 504
            H DL  NP +CYH++
Sbjct: 1258 HYDLLHNPASCYHIR 1272


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 405 AADGSPPLGNSAPKRLPPSRSFSLANARHSFDNKSKPS 292
           + + S P    +P RLPP  +FSL  +    + +++P+
Sbjct: 325 STEPSTPNVQKSPNRLPPVGNFSLPPSAPVREKRNRPA 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,713
Number of Sequences: 5004
Number of extensions: 53370
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)