Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40221
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0303 - 2287875-2289593 30 1.6
07_01_0484 - 3643294-3643478,3644282-3644555,3644646-3645018,364... 29 2.1
04_03_0703 - 18870287-18871351,18871542-18871733 29 2.8
07_03_1283 + 25454981-25455019,25457660-25457740,25458583-254586... 29 3.7
06_01_0082 + 656362-657798 28 4.9
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 28 6.5
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286... 28 6.5
09_04_0377 + 17086775-17088310 27 8.6
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 27 8.6
01_05_0816 + 25462571-25462630,25462752-25462838,25462929-254629... 27 8.6
>12_01_0303 - 2287875-2289593
Length = 572
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 290 TEGFDLLSKECLALAREKLRDGGRRLGAEFPRGGEPSAARRMSAEMSE 433
++ D+L++ A A R G RR GA GGE AARR++ + E
Sbjct: 143 SQELDVLAELEQAAAGGLRRSGTRRKGAASGGGGEGEAARRVAQQRQE 190
>07_01_0484 -
3643294-3643478,3644282-3644555,3644646-3645018,
3645177-3645233,3646034-3646458
Length = 437
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 269 NIIAEVKTEGFDLLSKECLALAREKLR 349
N+ A ++TEGFD L C +L E LR
Sbjct: 374 NLSAVIRTEGFDYLKDNCPSLQSEILR 400
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 511 CCTSARNTRGSTSGTRPPSATGF 579
CC SA TR ST PP TGF
Sbjct: 259 CCGSACGTRRSTWSPCPPGCTGF 281
>07_03_1283 +
25454981-25455019,25457660-25457740,25458583-25458663,
25459040-25459111,25459195-25459263
Length = 113
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = -2
Query: 504 LHVITRHRVTRQVQVAVLLLFS---VCSDISADI-RLAADGSPPLGNSA 370
+HV+TRH+ +Q Q A +++F+ +C+ + + R AAD + P+ A
Sbjct: 58 VHVVTRHQGPQQKQSARIVIFTQRRLCTATTTSMARSAADSNHPIKEHA 106
>06_01_0082 + 656362-657798
Length = 478
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 441 SVCSDISADIRLAADGSPPLGNSAPKRLPPSRSFSLANAR--HSFDNK 304
+V S + +R AAD L N A +PP+ + A R H FD K
Sbjct: 115 AVSSAVKEALRRAADAYAALANQAAAPVPPTFWTACAGCRLLHEFDRK 162
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 405 AADGSPPLGNSAPKRLPPSRSFSLANARHSFDNKSKPSVL 286
AA +P G+ A PP R+FSL+ + + N SK +V+
Sbjct: 131 AAAAAPADGSQACALRPPIRTFSLSELKKATRNFSKENVV 170
>04_04_1264 -
32227812-32228114,32228199-32228349,32228454-32228691,
32228786-32228996,32229077-32229270,32229334-32229450,
32229580-32230522
Length = 718
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 598 LQERSR*IRSPMAASSHSCSRGCFSHSYNNTSSCD 494
LQ ++R MA SH+CS + ++Y N + D
Sbjct: 245 LQVQNRSFEECMAKCSHNCSCMAYDYAYGNLTKAD 279
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 1 VPCPSGSSSSPLRDTYRRARYGRASK 78
V SGSS SPLRD+ +++R R +
Sbjct: 302 VAAASGSSPSPLRDSKKKSRSSRRKR 327
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 339 KNSAMEGDAWVLSFLEAENRLLQGGCRRKCLSILKTIREPPLG 467
K M+ D W++S A +R+L G C LS PP G
Sbjct: 1102 KQVRMQDDMWIVS---ASSRILDGECTSSALSYSLGWLSPPSG 1141
>01_05_0816 +
25462571-25462630,25462752-25462838,25462929-25462961,
25462962-25463030,25463146-25463339,25463632-25463773,
25464126-25464165,25464428-25464594,25465114-25465116,
25465371-25465499,25465811-25465888,25465974-25465979
Length = 335
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 378 NSAPKRLPPSRSFSLANARH----SFDNKSKPSVLTSAIILGCGQVSPGG 241
N AP S SFS A H S+DN+ P + + + C ++ PGG
Sbjct: 22 NPAPGDSVSSLSFS-PKANHLVATSWDNQWNPEIAVGILQVRCWEIQPGG 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,068
Number of Sequences: 37544
Number of extensions: 435960
Number of successful extensions: 1527
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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