Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40221
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                     155   3e-38
SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)                48   8e-06
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   5e-05
SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   7e-05
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   29   2.2  
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09)                    27   8.7  

>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score =  155 bits (375), Expect = 3e-38
 Identities = 83/195 (42%), Positives = 122/195 (62%), Gaps = 3/195 (1%)
 Frame = +3

Query: 3    SMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCSYRDCVKMI-AETTEVKLRIRERYI 179
            SMSLW EFITASGYLSARK+RSRF +LV +A  + + +  V+M+ A +    L I + Y 
Sbjct: 1384 SMSLWTEFITASGYLSARKMRSRFTSLVGEAIRRGNLQSQVQMVGANSHSTVLSINDTYT 1443

Query: 180  VQITPAFKCAGLWRGSAAHWPLPAI--PGRIPI*SPKLKRKVSIYYQRNVSRWQGKNSAM 353
            V++ PAF+C  +W  +   WP P    P +  + + KL R  ++  +      +  N+  
Sbjct: 1444 VELIPAFRCGAIWPQNTCSWPSPDSYWPSQAAVANIKL-RGFNLLAKDPYPSVKPVNT-- 1500

Query: 354  EGDAWVLSFLEAENRLLQGGCRRKCLSILKTIREPPLGLAG*PGDVLSHEDVLLYECEKH 533
            EGDAWVLSF ++E  LL GGCRR C+S+LK + +  L + G   + +  ++++LYECEKH
Sbjct: 1501 EGDAWVLSFTDSEELLLAGGCRRLCVSMLKALCDKHLNVPGDCIEYIHLKNLVLYECEKH 1560

Query: 534  PREHEWDEAAIGDRI 578
            PR+ EW + A+ DRI
Sbjct: 1561 PRDFEWFDEALFDRI 1575


>SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)
          Length = 364

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 13/192 (6%)
 Frame = +3

Query: 45  LSARKIRSRFQTLVAQACDKCSYRDCVKMIAETTEVKLRIRE---RYIVQITPAFKCAGL 215
           ++A  I+S    LV QA     Y   +        V L+I +    Y V +T AFK    
Sbjct: 130 INATGIKSTASGLVNQAVQNYQYGSFISQKLNGPAVTLKIDKDGKTYAVDLTFAFK-VNE 188

Query: 216 WRGSAAHWPLPAI---PGRIPI*SPKLKRKVSIYYQRNVSRWQGKNSAMEGDAWVLSFLE 386
           W  +A  W        P R  I   ++ +       +    +QG +       W  SF  
Sbjct: 189 WPSAANEWARRCRGGWPSRDLI--EEIVKDGCHVVAKKPEIFQGTSKGSL--CWRYSFST 244

Query: 387 AENRLLQGG-------CRRKCLSILKTIREPPLGLAG*PGDVLSHEDVLLYECEKHPREH 545
           AE +L Q G       C ++ L +LK++RE  +   G P      + ++ YECE+ P   
Sbjct: 245 AEKKLFQKGFSGDAGTCMKQVLRLLKSLREDYMNYMG-PLTSYHLKTIVFYECERFPDPS 303

Query: 546 EWDEAAIGDRIQ 581
           +WD + + +R +
Sbjct: 304 DWDGSKLAERFK 315


>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
 Frame = +3

Query: 174 YIVQITPAFKCAGLWRGSAAHWPLPAIPGRIPI*SPKLKRKVSIYYQRNVSRWQGKNSAM 353
           Y++ + P  +C  LW    A W L     R P  S KLKRK+        +    KNS  
Sbjct: 381 YVINLIPTIECPRLW-PKCASW-LKTCSRRWP--SEKLKRKIVTQGIHLAALPPSKNS-- 434

Query: 354 EGDAWVLSFLEAENRLL--QGG-CRRKCLSILKTIREPPLGLAG*PGDVLSH--EDVLLY 518
             D W + FL  +  L+  +G   + KCL I+K + E  L     P  +     E++L++
Sbjct: 435 --DLWQIKFLNGQRALIHHEGNEAKAKCLRIVKVLCEVDLSY---PKAIRPQYLENILMW 489

Query: 519 ECEKHPREHEWDEAAIGDR 575
              K+  + +W EA +  R
Sbjct: 490 ASRKYWSDSDWTEANLPAR 508


>SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
 Frame = +3

Query: 138 ETTEVKLRI---RERYIVQITPAFKCAGLWRGSAAHWPLPAIPGRIPI*SPKLKRKVSIY 308
           ++T +KL +   R+ Y V + P   C G W  SA  W +       P    K  ++ +I 
Sbjct: 158 QSTTLKLNVLSDRDNYHVVLVPTIPCPGRWTYSAHAWQIEG--SHWP---NKTTKQAAIA 212

Query: 309 YQRNVSRWQGKNSAMEG-DAWVLSFLEAENRLL--QGGCRRKCLSILKTIREPPLGLAG* 479
              ++    G++S  +  + W ++FL+   RLL  + GC+ KC  +++ + E    L   
Sbjct: 213 DGIHLI---GRSSHTKSPNHWQIAFLQPIRRLLADKTGCKHKCAMVMRILLENSSTLQEV 269

Query: 480 -PGDVLSHEDVLLYECEKHPREHEWDEAAIGDR 575
             G+ L  E+VLL+  +K P    WDE   G R
Sbjct: 270 IAGNHL--ENVLLHLFKKFPVASFWDEDRFGQR 300


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 531 VSRTRTTTRLHVITRHRVTRQVQV 460
           +SRTR   R+ VITR RV R+V V
Sbjct: 382 MSRTRVVRRITVITRTRVVRRVSV 405


>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 479 LPGKSKWRFSYCFQYAQTFPPTSALQQTVLR 387
           +PG +KWR     Q+A    P  A++ T LR
Sbjct: 222 IPGLTKWRIDDASQHAFVAYPVKAIEPTPLR 252


>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1821

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 305  LLSKECLALAREKLRDGGRRLGAEFPRGGEPSAARR 412
            ++ KE LA  R    DG  R   E   GG P  +RR
Sbjct: 1462 VIEKEALAATRVSTEDGKLRTRCEVCPGGPPEHSRR 1497


>SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09)
          Length = 1080

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 496  HMKTCC-CTSARNTRGSTSGTRPPSATGFNG 585
            H++ CC C  +R +R  +SGT+  +  G  G
Sbjct: 1013 HLELCCRCGESRESRAPSSGTQGVAEIGHTG 1043


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,761,868
Number of Sequences: 59808
Number of extensions: 456653
Number of successful extensions: 1327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)