Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40221
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...   172   2e-43
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...   172   2e-43
Z82083-5|CAB04973.1|  298|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    28   5.8  
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    28   5.8  

>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score =  172 bits (418), Expect = 2e-43
 Identities = 90/197 (45%), Positives = 122/197 (61%), Gaps = 5/197 (2%)
 Frame = +3

Query: 3   SMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCSYRDCVKMIAETTEVKLRIRERYIV 182
           SMSLWVEFITASGYLSARKIR RFQ +VAQ      + D  K++ + T+V++R+ ++Y V
Sbjct: 110 SMSLWVEFITASGYLSARKIRHRFQNIVAQVLQTPQFSDYCKLLQDNTDVRVRVDDKYTV 169

Query: 183 QITPAFKCAGLWRGSAAHWPLPAIPGRIPI*SPKLKRKVSIYYQRNVSRWQGKN-----S 347
           QIT AF+C G+W  SA+HWP+  +P      + + K +      R  +  Q  N     S
Sbjct: 170 QITCAFRCNGIWPRSASHWPIAGLPWPNAALANQTKAEGFDLTSRETAITQQNNPNKQAS 229

Query: 348 AMEGDAWVLSFLEAENRLLQGGCRRKCLSILKTIREPPLGLAG*PGDVLSHEDVLLYECE 527
           +ME DAW +    AEN LL GG RRK LSILK +R+  +   G P      + ++LYECE
Sbjct: 230 SMEADAWAMKMHGAENMLLTGG-RRKTLSILKCLRDAHMDFPGTPVTNYILKTLVLYECE 288

Query: 528 KHPREHEWDEAAIGDRI 578
           KH  E+EW++  IGDR+
Sbjct: 289 KHCSEYEWEDPNIGDRL 305


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score =  172 bits (418), Expect = 2e-43
 Identities = 90/197 (45%), Positives = 122/197 (61%), Gaps = 5/197 (2%)
 Frame = +3

Query: 3   SMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCSYRDCVKMIAETTEVKLRIRERYIV 182
           SMSLWVEFITASGYLSARKIR RFQ +VAQ      + D  K++ + T+V++R+ ++Y V
Sbjct: 110 SMSLWVEFITASGYLSARKIRHRFQNIVAQVLQTPQFSDYCKLLQDNTDVRVRVDDKYTV 169

Query: 183 QITPAFKCAGLWRGSAAHWPLPAIPGRIPI*SPKLKRKVSIYYQRNVSRWQGKN-----S 347
           QIT AF+C G+W  SA+HWP+  +P      + + K +      R  +  Q  N     S
Sbjct: 170 QITCAFRCNGIWPRSASHWPIAGLPWPNAALANQTKAEGFDLTSRETAITQQNNPNKQAS 229

Query: 348 AMEGDAWVLSFLEAENRLLQGGCRRKCLSILKTIREPPLGLAG*PGDVLSHEDVLLYECE 527
           +ME DAW +    AEN LL GG RRK LSILK +R+  +   G P      + ++LYECE
Sbjct: 230 SMEADAWAMKMHGAENMLLTGG-RRKTLSILKCLRDAHMDFPGTPVTNYILKTLVLYECE 288

Query: 528 KHPREHEWDEAAIGDRI 578
           KH  E+EW++  IGDR+
Sbjct: 289 KHCSEYEWEDPNIGDRL 305


>Z82083-5|CAB04973.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1010.7 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 305 NRNLPF*LRRLYWDAARYRREGPVCGG 225
           N+NLPF LRR   +  R +R+   C G
Sbjct: 72  NKNLPFFLRRSSNETTRLKRDAAACQG 98


>Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical
           protein C33D9.3b protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 233 TLAPPGDTWPHPNIIAEVKTEGFDLLSKECLALAREKLRDGGRRLGAEFPR 385
           T++PP DT   PN+I   +T  F   S++  +     L    R + +E  R
Sbjct: 57  TVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNR 107


>Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical
           protein C33D9.3a protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 233 TLAPPGDTWPHPNIIAEVKTEGFDLLSKECLALAREKLRDGGRRLGAEFPR 385
           T++PP DT   PN+I   +T  F   S++  +     L    R + +E  R
Sbjct: 57  TVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNR 107


>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 278 protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 387 PLGNSAPKRLPPSRSFSLANARHSFDNKSKPSVL 286
           P G  +P  + P    S A++RH  DN S  S+L
Sbjct: 66  PSGPISPSPISPVSQHSRASSRHDIDNTSLLSIL 99


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +3

Query: 12  LWVEFITAS---GYLS--ARKIRSRFQTLVAQA---CDKCSYRDCVKMIAETTEVKLRIR 167
           L+  FIT S   G+LS  +R + ++ +T   +A    D CS     K   E  ++ LRIR
Sbjct: 449 LYRRFITCSNFGGWLSMRSRDVNAQLKTHYVEALCSADFCSQTLATKHNVEIVDLVLRIR 508

Query: 168 ERYI 179
           ER I
Sbjct: 509 ERII 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,949,417
Number of Sequences: 27780
Number of extensions: 332722
Number of successful extensions: 1006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)