Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40221
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 190 PRRSSAPACGAGPPHTGP 243
           P+R S P    GPP  GP
Sbjct: 34  PQRGSPPNPSQGPPPGGP 51


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 24  FITASGYLSARKIRSRFQTLVAQACDKCSY 113
           F   SGY S R+  + +      +C KC Y
Sbjct: 19  FDKCSGYPSIRQGTTSYCLGCGDSCHKCKY 48


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 123 RNLYTSTCHRPELPTFGSATVSCAPIGIPK 34
           +N+  S   +P+L  FGS+ +  AP  I K
Sbjct: 184 KNILMSKNGQPKLTDFGSSVLIGAPNEIDK 213


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 125 ENDRGNNRSQVANS*KIH 178
           +ND   N +QV +S K+H
Sbjct: 527 QNDNNRNDNQVHHSSKLH 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,369
Number of Sequences: 438
Number of extensions: 4869
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)