Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40221
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52570.1 68416.m05788 expressed protein contains Interpro ent...    29   1.8  
At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family pr...    29   2.4  
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai...    28   5.4  
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    27   7.2  
At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family pr...    27   7.2  
At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family pr...    27   7.2  
At1g18810.1 68414.m02344 phytochrome kinase substrate-related co...    27   7.2  

>At3g52570.1 68416.m05788 expressed protein contains Interpro entry
           IPR000379
          Length = 335

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 243 LPAIPGRIPI*SPKLKRKVSIYYQRNVSRWQGKNSAMEGDAWVLSF 380
           L ++P  IP     + R V + + R++S W G N    GD+   +F
Sbjct: 193 LQSLPSSIPSRKWLVDRMVELGFSRSLSEWIGSNLKRSGDSETWTF 238


>At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 401

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 387 PLGNSAPKRLPPSRSFSLANARHSFDNKSKPSVLTSAIILGCGQVS 250
           PL +++   LP SR F+      S    S P    +AI+LGCG ++
Sbjct: 11  PLFSTSGIYLPASRRFTRIRMSSSSSIDSVPPPPDNAIVLGCGGIA 56


>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 465

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 269 NIIAEVKTEGFDLLSKECLALAREKLR 349
           N+IA ++++GFD L + C +L  E L+
Sbjct: 359 NLIAVMRSDGFDYLREHCPSLQSELLK 385


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 9   SLWVEFITASGYLSARKIRSRFQTLVAQACDKCSYRDCVKMIAETTEVK 155
           SLW+   ++ G    +K     +   A A D    RD  KM+A+   ++
Sbjct: 493 SLWISRFSSKGSFPQKKASETAKEANASASDAAKTRDSRKMLADKNVIR 541


>At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 403

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 387 PLGNSAPKRLPPSRSFSLANARHSFDNK--SKPSVLTSAIILGCGQVS 250
           PL +++   LP SR F+    R S  +   S P    +AI+LGCG ++
Sbjct: 11  PLFSTSGIYLPASRRFTSFRIRMSSSSSIDSVPPPPDNAIVLGCGGIA 58


>At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 404

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 387 PLGNSAPKRLPPSRSFSLANARHSFDNK--SKPSVLTSAIILGCGQVS 250
           PL +++   LP SR F+    R S  +   S P    +AI+LGCG ++
Sbjct: 11  PLFSTSGIYLPASRRFTSFRIRMSSSSSIDSVPPPPDNAIVLGCGGIA 58


>At1g18810.1 68414.m02344 phytochrome kinase substrate-related
           contains weak similarity to Swiss-Prot:Q9SWI1
           phytochrome kinase substrate 1 [Arabidopsis thaliana]
          Length = 387

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 427 HFRRHPPCSRRFSASRKLSTQASPSIAEFFPCQRETFL 314
           H   HP  ++  S+  K S   +PS+     C  +TFL
Sbjct: 94  HPHPHPQLTKTTSSRSKTSRHGTPSVRSESSCNSQTFL 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,956
Number of Sequences: 28952
Number of extensions: 311451
Number of successful extensions: 927
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)