Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40220
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.74 
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    27   2.3  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   3.0  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   5.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   5.2  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   5.2  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   6.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.1  

>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 7   HVYPRKCSHRVSLRFSSLSPVSQR*RLCLPGTKKLSRTR 123
           H+ P K SH +SL + S   +SQ     +  T+KL+RT+
Sbjct: 19  HLRP-KSSHSISLGYLSKEKISQEEMQIIRATQKLARTK 56


>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 225 PMSTKVGISFHKGANR-LNGERFSHGN--VNWSSV 130
           PM+TK+G  ++KG      G++  HG   V WS V
Sbjct: 14  PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 154 WERELVICNGDGCAITSLS 98
           WE +  +C+  GCA+ SL+
Sbjct: 71  WENDNAMCSNQGCAVKSLN 89


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 119  PVSITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 214
            P +ITDD    P  N     L +PL W +I ++
Sbjct: 1059 PYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 12  ISKKMFSPRLFAVFIAFAGFATVTALPARDKEVIAHPSPLQ 134
           ++KK   P L   F+A     T +A P   K  I  P P++
Sbjct: 668 LTKKSSFPALLKGFLALPATVTTSANPLGFKSTIQRPIPIK 708


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 207 GISFHKGANRLNGERFSHGNVNWSSVMETGAR 112
           G+ F+ GA     E  +  N +W +++++GAR
Sbjct: 400 GVEFYVGAASSEVEAAAQKNGDWQTLIDSGAR 431


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 386 KNWLANTSWSSSLASCDPWTKIKS 315
           + W+ N+S S  L  CD   KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
 Frame = -2

Query: 187  SKQTE---WRKVQPWERELVICNGDGCAITSLSRAGKAVTVAKPAK----AMKTAKRRGE 29
            SKQ E   W K Q  +RE V C+ D C         K+ T     +     ++T    G+
Sbjct: 819  SKQLENCTWAKAQRMKREQVECDLDFCGFIVFENKLKSTTATVIRELNDARIRTVMCTGD 878

Query: 28   NIFLDIRV 5
            N+   I V
Sbjct: 879  NVLTSICV 886


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,645
Number of Sequences: 5004
Number of extensions: 37317
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)