Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40220
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1393 - 26245105-26246862                                         30   1.8  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   4.1  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   4.1  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    27   9.4  
02_05_0092 + 25749070-25750638                                         27   9.4  

>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 184 KQTEWRKVQPWERELVICNGDGCAITSLSRAGK---AVTVAKPAKAMKTAKRRGENI 23
           ++  WR+ + + R  V+  GDGCA+  ++R GK       A+P +  K +K R   +
Sbjct: 199 REKSWRRYRDYRR-FVLVPGDGCAL-DINRVGKFRSGTNAARPPR-QKGSKNRNPRV 252


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 145  HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 234
            HVPM EP  I  S C  V AD    G   KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 122 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 238
           +S  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 92  ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 361 HDVFASQFFHTYSLPVNSSAADVTAELTSD 450
           HD F   + H  S+P+    A V AE++ D
Sbjct: 809 HDSFLRSYLHLTSMPLPCEGAAVPAEISKD 838


>02_05_0092 + 25749070-25750638
          Length = 522

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 507 RRVVPIVETGAPYKK--DEPVEKTTVETLDVSTTQEPKTSAPA 629
           R+ +P+    A  ++   EP    T   +D+   QEP T+APA
Sbjct: 363 RKPMPVRSAPAASEQHHQEPAMVDTAAPMDIHNVQEPDTAAPA 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,547
Number of Sequences: 37544
Number of extensions: 259334
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)