Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40220
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   31   0.78 
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    29   3.1  
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   5.5  
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)                   28   7.2  
SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)                    28   7.2  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 322 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 471
           I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG L + A
Sbjct: 64  IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -2

Query: 241 SVDSWPDVHKSGDQLPQRSKQTEWRKVQPWEREL--VICNGDGCAITSLSRAGKAVTVAK 68
           +V S+  + KSG  +P R++ T +R   PW +E+  ++C  D   +T      ++ TV  
Sbjct: 135 AVSSYRFLCKSGHYIPLRTRSTLFR--NPWTKEIEFLVCTND--VLTEFDLPPQSNTVVV 190

Query: 67  PAKAMK 50
           P  + +
Sbjct: 191 PPTSQR 196


>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 584 GFYCRLFYRLVLLVRSASLDNRYNAPVFFVLSTFSLIGA 468
           G+ CRL  RLV +VR     + Y   V  +L+ F L+ A
Sbjct: 238 GYDCRLRVRLVRIVRKFDRYSEYGQAVIILLTCFFLLVA 276


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 334 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 423
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
          Length = 444

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 116 APVSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGP 229
           +P + T DQ +  + + SPFS  APL    P FVD  P
Sbjct: 220 SPETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253


>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
          Length = 275

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 234 ILGPMSTKVGISFHKGANRLNGERFSH 154
           + G   T+VGI  H G NR+  + F H
Sbjct: 209 VAGEKKTEVGIKIHSGRNRIVRKIFEH 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,894,243
Number of Sequences: 59808
Number of extensions: 294072
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)