Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40220
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25620.1 68415.m03069 protein phosphatase 2C, putative / PP2C...    31   0.84 
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    29   2.6  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   5.9  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   5.9  
At3g11310.1 68416.m01375 hypothetical protein                          27   7.8  

>At2g25620.1 68415.m03069 protein phosphatase 2C, putative / PP2C,
           putative
          Length = 392

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 148 RELVICNGDGCAITSLSRAGKAVTVAKPAKAMKTAKRR 35
           R LV+ N   C    LSR GKA+ +++  K M + +RR
Sbjct: 201 RSLVVANAGDCRAV-LSRQGKAIEMSRDHKPMSSKERR 237


>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 382 FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNT 507
           F H     +N++A+D+ +     G     +P++ENVD  K+T
Sbjct: 19  FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHT 60


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 467 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 381
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 467 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 381
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 328 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELT-SDG 453
           V GS+   +DDH +     F +   P +SS  D+   +T S+G
Sbjct: 339 VPGSEGGADDDHHIVMDHHFESPHDPASSSEIDLNEPVTGSEG 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,680,035
Number of Sequences: 28952
Number of extensions: 202871
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)