Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40219
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 158 6e-40
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 158 6e-40
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 134 1e-32
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 105 8e-24
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 95 9e-21
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 29 0.66
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 2.0
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 2.7
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 4.7
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 26 6.1
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 8.1
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 8.1
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 158 bits (384), Expect = 6e-40
Identities = 75/86 (87%), Positives = 80/86 (93%)
Frame = +3
Query: 255 NQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEK 434
NQPGVLIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK
Sbjct: 432 NQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEK 491
Query: 435 STNKENKITITNDKGRLSKEEIERML 512
T K KITITNDKGRLSKEEI+RM+
Sbjct: 492 GTGKTQKITITNDKGRLSKEEIDRMV 517
Score = 70.1 bits (164), Expect = 3e-13
Identities = 38/69 (55%), Positives = 40/69 (57%)
Frame = +1
Query: 1 LLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGG 180
L+ DFFNGKE KSINPDE IL GD SE+ QD GIETAGG
Sbjct: 347 LVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGG 406
Query: 181 VMTTLIKRN 207
VMT LIKRN
Sbjct: 407 VMTPLIKRN 415
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +1
Query: 559 IQAKNALESYWFSMKSTMEDEKLKVKISDSDKQTILDKCNGTIKWLDSN 705
IQAKN LESY +S++++++D LK K+ SDK+ I TI+WLD N
Sbjct: 534 IQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHN 582
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 158 bits (384), Expect = 6e-40
Identities = 75/86 (87%), Positives = 80/86 (93%)
Frame = +3
Query: 255 NQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEK 434
NQPGVLIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK
Sbjct: 432 NQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEK 491
Query: 435 STNKENKITITNDKGRLSKEEIERML 512
T K KITITNDKGRLSKEEI+RM+
Sbjct: 492 GTGKTQKITITNDKGRLSKEEIDRMV 517
Score = 70.1 bits (164), Expect = 3e-13
Identities = 37/69 (53%), Positives = 40/69 (57%)
Frame = +1
Query: 1 LLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGG 180
L+ DFFNGKE KSINPDE +L GD SE+ QD GIETAGG
Sbjct: 347 LVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGG 406
Query: 181 VMTTLIKRN 207
VMT LIKRN
Sbjct: 407 VMTPLIKRN 415
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +1
Query: 559 IQAKNALESYWFSMKSTMEDEKLKVKISDSDKQTILDKCNGTIKWLDSN 705
IQAKN LESY +S++++++D LK K+ SDK+T+ TI+WLDSN
Sbjct: 534 IQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSN 582
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 134 bits (324), Expect = 1e-32
Identities = 63/87 (72%), Positives = 75/87 (86%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 NQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEK 434
NQ VLIQV+EGER +TKDNNLLGKF+L GIPPAPRGVPQIEVTF++DANG+L VSA++K
Sbjct: 461 NQNTVLIQVYEGERTLTKDNNLLGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSAVDK 520
Query: 435 S-TNKENKITITNDKGRLSKEEIERML 512
S K K+ I NDKGRLS+E+IERM+
Sbjct: 521 SGKGKPEKLVIKNDKGRLSEEDIERMV 547
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/69 (39%), Positives = 35/69 (50%)
Frame = +1
Query: 1 LLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGG 180
LL+ FF GK+ +K INPDE +L G++ + + GIET GG
Sbjct: 379 LLESFF-GKKASKGINPDEAVAYGAAVQAGVLSGEEGSD--NIVLLDVIPLTLGIETTGG 435
Query: 181 VMTTLIKRN 207
VMT LI RN
Sbjct: 436 VMTKLIGRN 444
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 550 KVTIQAKNALESYWFSMKSTMED-EKLKVKISDSDKQTILDKCNGTIKWLD 699
K I+A+N LE+Y +S+K +D E+L K+ DKQ +LD +WL+
Sbjct: 561 KERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLE 611
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 105 bits (251), Expect = 8e-24
Identities = 48/85 (56%), Positives = 66/85 (77%)
Frame = +3
Query: 258 QPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKS 437
Q V I+VF+GER + +DN L+G F+LTGI PAP+G PQIEV+FD+DA+GI+NVSA +K+
Sbjct: 476 QTAVEIRVFQGERELVRDNKLIGNFQLTGIAPAPKGQPQIEVSFDVDADGIINVSARDKA 535
Query: 438 TNKENKITITNDKGRLSKEEIERML 512
TNK++ IT+ G L+ EIE M+
Sbjct: 536 TNKDSSITVAGSSG-LTDSEIEAMV 559
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +1
Query: 25 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKR 204
+E KS+NPDE +L G V+D GIET GGV T LI R
Sbjct: 402 REPAKSVNPDEAVAIGAAIQGGVLSG----HVKDLVLLDVTPLSLGIETLGGVFTRLINR 457
Query: 205 N 207
N
Sbjct: 458 N 458
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 95.1 bits (226), Expect = 9e-21
Identities = 43/86 (50%), Positives = 59/86 (68%)
Frame = +3
Query: 255 NQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEK 434
NQ V V++GER +N LG+F+LTGIPP PRG ++E TF++DANGIL V+A+EK
Sbjct: 437 NQTTVTFPVYQGERVNCAENEPLGEFQLTGIPPMPRGQAELEATFELDANGILKVTAVEK 496
Query: 435 STNKENKITITNDKGRLSKEEIERML 512
+T + I ITN G LS +I+ M+
Sbjct: 497 TTGRSAHIEITNSVGHLSSTKIQEMI 522
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 LLQDFFNGKELNKSINPDEXXXXXXXXXXXIL-HGDKSEEVQDXXXXXXXXXXXGIETAG 177
L+ DFF+G+ LNKSINPDE +L + S++ QD G+ G
Sbjct: 351 LVSDFFDGRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVPLSLGVAMEG 410
Query: 178 GVMTTLIKRN 207
V + RN
Sbjct: 411 NVFGVVCPRN 420
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 396 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERM 509
D LNVS + S +E +T ++ R+ +EE +RM
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRM 95
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 404 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAY 508
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 421 ETLRIPLASMSKVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARSPS 284
E L PLA MS TSI G G GG P + + + + +SPS
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFPRMNRRQRRRMG-IFDQSPS 120
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 562 QAKNALESYWFSMKSTMEDEKLKVKISDSDKQTILDKCNGTIKWLDSNQL 711
+ K ALE+ WF + +D + ++ ++ I+ K +G + W QL
Sbjct: 285 EVKKALEN-WFLCYADEKDPAHQDEVEVFGRKIIVPKASGNVAWFTFEQL 333
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +3
Query: 381 VTFDIDANGILNVSA---IEKSTNKENKITITNDKGR---LSKEEIERMLMRQXSTETRM 542
VT + D + LN + +E K+N I N + LSKEE R +Q + R+
Sbjct: 49 VTHETDLDEFLNTAELGEVEFIAEKQNVTVIQNPEQNPFLLSKEEAARSKQKQEKNKDRL 108
Query: 543 T 545
T
Sbjct: 109 T 109
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 459 TITNDKGRLSKEEIERMLMRQXSTETRMTSKGDHPGQECIGILLVQHEVY 608
T+ D+ R++ E RM+ R+ + R+T GD G + Q E+Y
Sbjct: 604 TLNTDQSRMNAE---RMVPRKDNKRIRVTFNGDVAGNLSWKLWPQQREIY 650
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 459 TITNDKGRLSKEEIERMLMRQXSTETRMTSKGDHPGQECIGILLVQHEVY 608
T+ D+ R++ E RM+ R+ + R+T GD G + Q E+Y
Sbjct: 604 TLNTDQSRMNAE---RMVPRKDNKRIRVTFNGDVAGNLSWKLWPQQREIY 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,861
Number of Sequences: 5004
Number of extensions: 46724
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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