Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40218
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.58 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   1.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.2  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 327 HSNYLKLLENFKVGDEVSIS--MEVRPRNTTGLLLSVH-GKKDYMVLELLDS 473
           +SN  +   + + GD+   +  ++  P NT G +LS+H  K D   + LL S
Sbjct: 257 NSNSSEKKSSIQHGDDAHKTHHLDKNPENTLGTMLSIHPSKLDVEQMNLLHS 308


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 161 DRISKIFDNFYQPFMGCLKG 220
           +++ ++ DNF   ++ CLKG
Sbjct: 6   EKVHELCDNFCHRYISCLKG 25


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 161 DRISKIFDNFYQPFMGCLKG 220
           +++ ++ DNF   ++ CLKG
Sbjct: 162 EKVHELCDNFCHRYISCLKG 181


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 532 QQTLPVRRKLAQDSRREISVRGLVGVDGHFSKPRDSARTHRRTRISA 672
           Q+TL    +   D+     +R +V     F KP  S+   + T  SA
Sbjct: 281 QETLKKISQFQLDAHEFACLRAIVLFKTSFEKPSSSSNQEKTTTESA 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,860
Number of Sequences: 336
Number of extensions: 2796
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)