Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40218
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   1.9  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   4.5  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   5.9  
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.9  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.9  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.8  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   7.8  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 253 NTSHLLTVHEKSLEAAHKRLVEVVEDLRNSVVNV 152
           N S +  V E S EAA +RL+ +V  LR S  N+
Sbjct: 668 NISVVCLVRESSDEAAKERLISLVPSLRISSENI 701


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 489 VENGNGPSALRTNSATNITCATETGT 566
           V+ G   S +RTN+ TN TC   + T
Sbjct: 122 VDAGRSTSDIRTNACTNYTCFDYSST 147


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = +2

Query: 131 YYYGGLRYVNDRISKIFDNFYQPFMGCLKGLLMN-GQQVTRIATL*TPCDASITSKXRLL 307
           ++ G L     ++SK   NF       +K +L     +  R+A L    +  +  K  LL
Sbjct: 397 FHAGHLHIEGQKMSKSLKNFIT-----IKEILKKFTPRQLRLAFLLQQWNTQLDFKETLL 451

Query: 308 R---SIEQYTQQLFEVARELQSWGRGVYINGGTSP 403
               +IEQ  +  F   R L +   GV  NGG  P
Sbjct: 452 AYVLNIEQALENFFRTVRALMNETEGVSANGGHVP 486


>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 2   YNDIDWHTVTLTRN---GGHGK--LAVDSEMVGETSVTCNTPLSLA 124
           YN +   TVT T     G + K  + +DS+ V  TS T  TP++ A
Sbjct: 59  YNVLKPDTVTFTVTETAGSYAKRSIEIDSDSVSPTSATTTTPVASA 104


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 247  SHLLTVHEKSLEAAHKRLVEVVEDLRNSV 161
            S +L   ++ +EA   RL+E+VE+L+N V
Sbjct: 1011 SVVLRGDKEIVEALETRLLEIVEELKNQV 1039


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 541 LPVRRKLAQDSRREISVRGLVGVDGHFS 624
           LP   K A DS+    + GL+  DGHFS
Sbjct: 74  LPKHLKPANDSQFGHYLAGLIDGDGHFS 101


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 309 EASNNTHSNYLKLLENFKVGDE---VSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEV 479
           EA NN   +  K ++NF + +E   V   +    R     +L V  + D+ + EL D   
Sbjct: 557 EAENNNKVDMFKDIDNFDLSEEPNDVDYELAQEIRELKMSILMVRTEMDFHLQELRDYLE 616

Query: 480 VANVE 494
             N+E
Sbjct: 617 YPNLE 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,401
Number of Sequences: 5004
Number of extensions: 48337
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)