Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40218
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0713 - 35687672-35689219                                         31   1.1  
04_03_0200 - 12570414-12570712,12572704-12573007                       30   2.0  
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987...    29   2.6  
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868...    29   4.6  
08_01_0959 - 9553402-9554100                                           28   6.1  

>03_06_0713 - 35687672-35689219
          Length = 515

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 439 RRTTWCWSCSTAKWSRTSRTETDLPRYVQTQQQTLP 546
           R   + W+C  A ++R  R E  L  Y+Q +++T+P
Sbjct: 139 REDAFPWNCLIAGYARLGRHEDALALYLQMEEETVP 174


>04_03_0200 - 12570414-12570712,12572704-12573007
          Length = 200

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/73 (27%), Positives = 28/73 (38%)
 Frame = +3

Query: 348 LENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSALRTN 527
           L+     DE  +    RP    G+  S  GKK     E  D   +   ENG    A   +
Sbjct: 99  LQGDSCADEHGVEQAARPSCNAGIASSSGGKKRSKAWEDFD---ITEKENGKAVKARCIH 155

Query: 528 SATNITCATETGT 566
             T + C ++ GT
Sbjct: 156 CHTVVKCGSDKGT 168


>11_06_0249 +
           21697863-21697923,21698119-21698128,21698160-21698766,
           21699011-21699090,21699182-21699263,21699357-21699428,
           21700128-21700406
          Length = 396

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 406 TPRGCCSASTGRRTTWCWSCSTAKWSRTSRTETDLPRYVQTQQQTLPVRRKLAQDSRREI 585
           TPR CC AS     + C   S+++  +  +  T  P    +++Q  P   KL+  S   I
Sbjct: 336 TPRPCCRASRDSLDSICKCSSSSRNGKPQQPATAKP--AASKKQPKPHAHKLSDQSAMNI 393

Query: 586 SV 591
           +V
Sbjct: 394 AV 395


>01_03_0084 -
           12286416-12286514,12286632-12286683,12286771-12286871,
           12287498-12287650,12287703-12287762,12287872-12287998,
           12288581-12288708,12289196-12289291,12289473-12289526,
           12289603-12289689,12290954-12291057,12291163-12291246,
           12291374-12291422,12291523-12291886,12292186-12292226
          Length = 532

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 327 HSNYLKLLENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENG 500
           H++YL ++ +F+ GD    S+ + P+N+  ++  V  K   + +  L  +VV +  +G
Sbjct: 402 HASYLMVVLHFQGGDATVNSVHLSPKNSDHII--VCNKTSSIYIMTLQGQVVKSFSSG 457


>08_01_0959 - 9553402-9554100
          Length = 232

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 381 ISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSALRTNSATNITCATET 560
           +S+EVR     G +L++HG  D M       +    +E G GP     +   +  CA  T
Sbjct: 1   MSLEVRHPARPGCMLTLHGDADAMAF-----QCTGCMETGKGPRYTSGDHVLHTYCALAT 55

Query: 561 GT 566
            T
Sbjct: 56  PT 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,756,980
Number of Sequences: 37544
Number of extensions: 350693
Number of successful extensions: 1134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)