Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40218
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 38 0.006
SB_55345| Best HMM Match : Laminin_G_2 (HMM E-Value=2e-31) 38 0.008
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 36 0.031
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 33 0.17
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0) 33 0.29
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.29
SB_16466| Best HMM Match : DUF258 (HMM E-Value=0) 30 1.5
SB_5140| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7) 29 2.7
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 29 2.7
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 29 3.6
SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 29 3.6
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_7492| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0025) 29 3.6
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 6.2
SB_16252| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 28 6.2
SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44) 28 8.2
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 28 8.2
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37) 28 8.2
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 WHTVTLTRNGGHGKLAVDSE-MVGETSVTCNTPLSLAPPYYYGG-LRYVNDRISKIFDNF 190
WHTV R G L +DSE V + C+ L+LA P Y GG L + K+ N
Sbjct: 335 WHTVVAERYRRDGSLILDSEPAVKSQAPCCSVGLNLALPLYVGGVLNFETIDTDKVGVN- 393
Query: 191 YQPFMGCLKGLLMNGQQVTRI 253
+ F GC+ + ++ + I
Sbjct: 394 -RGFKGCISDVAVDDNPIDLI 413
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 17 WHTVTLTRNGGHGKLAVDSEMVGE-TSVTCNTPLSLAPPYYYGGLRYVNDRISKIFDNFY 193
W+TV LTR G L VDS+ V +S +T L+L + GG+ + +I + F F
Sbjct: 121 WYTVVLTRQESEGTLQVDSQPVRRGSSKGKSTGLNLNQNMFLGGVANYS-KIDR-FSGFN 178
Query: 194 QPFMGCLKGLLMNGQQV 244
+ F+GC+ + ++ +
Sbjct: 179 RGFIGCISYIKVDNNTI 195
>SB_55345| Best HMM Match : Laminin_G_2 (HMM E-Value=2e-31)
Length = 189
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 17 WHTVTLTRNGGHGKLAVDSEMVGE-TSVTCNTPLSLAPPYYYGGLRYVNDRISKIFDNFY 193
W+TV LTR G L VDS+ V +S +T L+L + GG+ + +I + F F
Sbjct: 112 WYTVVLTRQESEGTLQVDSQPVRRGSSKGKSTGLNLNQNMFLGGVANYS-KIDR-FSGFN 169
Query: 194 QPFMGCLKGLLMNGQQV 244
+ F+GC+ + ++ +
Sbjct: 170 RGFIGCISYIKVDNNTI 186
>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1049
Score = 35.9 bits (79), Expect = 0.031
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +2
Query: 8 DIDWHTVTLTRNGGHGKLAVDSEMVGETSVTCNTPLSLAPPYYYGGLRYVNDRISKIFDN 187
++DWH + +TR+ H + VD + TS+ + +A Y GG + D
Sbjct: 958 NMDWHDIQITRHAFHLNMTVDGKYT--TSLDLDGDRRIAGSLYIGG-----EPGGMREDG 1010
Query: 188 FYQPFMGCLKGLLMNGQQ 241
F+GC++ + +NGQ+
Sbjct: 1011 SNPGFIGCIRNIYVNGQR 1028
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 35.1 bits (77), Expect = 0.054
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 YNDIDWHTVTLTRNGGHGKLAVDSEMVGE-TSVTCNTPLSLAPPYYYGGL--RYVNDRIS 172
++D WH + LTR G L VD +S +T +S+ Y GGL ++ R
Sbjct: 1415 FDDNQWHRLQLTRKDSVGTLTVDGIYTASGSSSGASTFISMGTGVYIGGLPTDFIITRSD 1474
Query: 173 KIFDNFYQ-PFMGCLKGLLMNG 235
+ PF+GC+K + G
Sbjct: 1475 PPAARVGRYPFIGCIKSVTSQG 1496
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 14 DWHTVTLTRNGGHGKLAVDS-EMVGETSVTCNTPLSLAPPYYYGGLRYVNDRISKIFDNF 190
DWHTVT R+G G + D+ E V +S L L P + GG+ +++ + + +F
Sbjct: 861 DWHTVTAGRSGPEGYVYADNCEKVRGSSEGNLQGLDLYAPLFIGGVHDLSELPTYV--DF 918
Query: 191 YQPFMGCLKGL 223
F G L G+
Sbjct: 919 KSGFRGNLYGM 929
>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2225
Score = 32.7 bits (71), Expect = 0.29
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = +2
Query: 5 NDIDWHTVTLTRNGGHGKLAVDSEMVGETSVTCNTP-----LSLAPPYYYGGLRYVNDRI 169
ND WH V + R G H + +D G+ + +P L+L Y G + +N RI
Sbjct: 1850 NDGKWHHVAVERQGNHATVTLD---YGKHQASGKSPGRMRILNLDGNSIYFGAKVLNSRI 1906
Query: 170 SKIFDN---FYQPFMGCLKGLLMNGQQV 244
+ F GC++ L +NG+ +
Sbjct: 1907 KRSEGQGVIVENGFKGCMQNLNVNGKDL 1934
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +1
Query: 373 RCLYQWRYVPVTPRGCCSASTGRRTTWC--WSCSTAKWSRTSRTETDLPRYVQTQQQTLP 546
RC R P +P G S S TTWC +C+ W + D RY+ + P
Sbjct: 222 RCWTYTRQSPTSPTGVGSTSDVSGTTWCRRTTCALCLWETVTLKRKDGFRYIVFDFEAQP 281
Query: 547 VRR 555
+ +
Sbjct: 282 LAK 284
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 378 SISMEVRPRNTTGLLL----SVHGKKDYMVLELLDSEVVANVENGNGPSALR 521
+IS+ ++PR+ TGL+L GK D++ L L + V + G+GP+ +R
Sbjct: 557 TISLVLKPRSDTGLILFNSQKKDGKTDFISLSLREGIVEFIFDCGSGPAVIR 608
>SB_16466| Best HMM Match : DUF258 (HMM E-Value=0)
Length = 293
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 339 LKLLENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMV 455
+K VGD V +E TTG++ ++H +K+Y+V
Sbjct: 36 IKSTNPIAVGDIVDYDIENTTDETTGVITAIHDRKNYIV 74
>SB_5140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 438 KKDYMVLELLDSEVVAN--VENGNGPSALRTNSATNITCATETGTRFTS*NLCTWSR-GC 608
++D+ LE + ++ V ++N + S + N+ T A + RF+ L TW+R
Sbjct: 163 ERDFAPLEFVPNDQVQEHFIDNSHSTSETQENTTTLEVSAETSSFRFSIGQLPTWARYRV 222
Query: 609 RRSLLE-APGFGAYTSTDTH 665
R+ LL A Y ST H
Sbjct: 223 RKKLLPIASLMTTYESTTAH 242
>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 5 NDIDWHTVTLTRNGGHGKLAVDSEMVGE 88
ND WH V + R G H KL +D G+
Sbjct: 327 NDNRWHWVEIKRRGRHAKLVLDGREGGK 354
>SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7)
Length = 543
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 403 VTPRGCCSASTGRRTTWCWSCSTAKWSRTSRTETDL---PRYVQT 528
+TP G S STG RTT S + SR + T + P +QT
Sbjct: 130 ITPTGASSTSTGARTTSAGSIAPTSGSRPTGMTTSMEEDPEAIQT 174
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 686 PPMYSAEMRVRRCVRAESRGFEK*PSTPTRPRTEISRRES 567
PP ++ R R R+ SR + PSTP P T SR S
Sbjct: 1360 PPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRASS 1399
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 8 DIDWHTVTLTRNGGHGKLAVDSEMVGETSV 97
D+ WH + +T + G +L +D + GET +
Sbjct: 988 DLFWHHIAVTHSSGKVQLFIDGTLKGETQL 1017
>SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 318 NNTHSNYLKLLENFKVGDEVSISMEVRPRN 407
+N SN + L + GDE+ I +EVRP N
Sbjct: 275 HNNLSNQISLENQGRPGDEIIIGIEVRPSN 304
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 246 LVLQRCERLAMXXXXXXXVYFEASNNTHSNYLKLLENFKVGDEVSISMEVR 398
+++ ERLA+ VY E S YL+LLE+ V D + S E+R
Sbjct: 644 VIMSVLERLAVSNRRNMFVYRENSGRVF--YLRLLESLCVSDSLEFSGELR 692
>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 246 LVLQRCERLAMXXXXXXXVYFEASNNTHSNYLKLLENFKVGDEVSISMEVR 398
+++ ERLA+ VY E S YL+LLE+ V D + S E+R
Sbjct: 120 VIMSVLERLAVSNRRNMFVYRENSGRVF--YLRLLESLCVSDSLEFSGELR 168
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 2 YNDIDWHTVTLTRNGGHGKLAVDSEMVGETSVTCNTPLSLAPPYYYGGL 148
YND WH V L +NG +VD E V + + N + + GG+
Sbjct: 518 YNDGKWHHVHLDKNGLDITFSVDQE-VKKGRLVANQRIQTTSDLFIGGV 565
>SB_7492| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0025)
Length = 87
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 521 YKLSNKHYLCDGNWHKIHVVK 583
Y SN LCDG WH++++ K
Sbjct: 16 YTPSNSMELCDGKWHRVNLNK 36
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 686 PPMYSAEMRVRRCVRAESRGFEK*PSTPTRPRTEISRRESCASFRRT 546
PP ++ R R +R+ + + PSTPT + S RES R T
Sbjct: 200 PPPRTSTPRSRSTLRSRAGSRIRTPSTPTTTSSRASSRESARGTRTT 246
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 17 WHTVTLTRNGGHGKLAVDSEMVGETSVTCNTPLSLAPPYYYGGLRY 154
W+T+ R+G +G+L ++ V +S + L++ P + GG+ +
Sbjct: 1972 WNTLRAMRSGRYGRLVLNGVEVSGSSPPSLSKLNVDLPMFLGGVPF 2017
>SB_16252| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 580
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 442 RTTWCWSCSTAKWSRTSRTETDLPRYVQTQQQTLPV 549
R TWC + S T TD+P QT Q P+
Sbjct: 458 RATWCMTIDDLVQMTVSLTSTDVPFGRQTTHQVFPL 493
>SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)
Length = 267
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 547 VRRKLAQDSRREISVRGLVG-VDGHFSKPRDSARTHRRTRISALYI 681
+ KL +D +R VR +G GH KP R+HR RI ++I
Sbjct: 29 ISAKLYKDIQR---VRKAIGEASGHGKKPLAKRRSHRNMRIVKIFI 71
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 309 EASNNTHSNYLKLLENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVAN 488
E N H N +K LEN + I E R +L V K+ LE ++EV A
Sbjct: 831 EMDNTHHKNLIKTLENRVQELQTQIDTESRSNQQARDML-VRNTKEMERLEFKNTEVKAQ 889
Query: 489 VE 494
+E
Sbjct: 890 LE 891
>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
Length = 1481
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 11 IDWHTVTLTRNGGHGKLAVDSEMVGETSVTCNTPLSLAPPYYYGGLRYVNDRISKIFDN 187
I H + +GG L V S + E +VT +TP +A YY + + I++N
Sbjct: 1177 ISLHNESEEEDGGVDGLCVTSVLWDEVTVTSDTPRVIATEPYYANVDRGSMPSEPIYEN 1235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,519,534
Number of Sequences: 59808
Number of extensions: 389023
Number of successful extensions: 1468
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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