Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40218
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 40 0.002
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 40 0.002
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 40 0.002
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 40 0.002
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 33 0.15
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 33 0.15
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 33 0.15
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 31 0.78
AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlec... 31 0.78
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 29 2.4
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 29 2.4
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 29 4.1
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 29 4.1
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 336 YLKLLENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSA 515
Y + ++++VG + +E+RPR G+L SV G +Y+ +E ++ + VE+G+G
Sbjct: 3498 YAIVQKDYEVGLTFGLEVEMRPRMKNGILFSV-GVLEYITVEFVNGSIKTTVESGSGGEE 3556
Query: 516 L 518
L
Sbjct: 3557 L 3557
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 2 YNDIDWHTVTLTRNGGHGKLAVDSE 76
YND WHTV++ R H K+ +D E
Sbjct: 2974 YNDGKWHTVSIVREEKHVKIMIDGE 2998
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 381 ISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSALRTNSA 533
IS+ + GLL V KD+M LEL D V +V+ G+G T S+
Sbjct: 2922 ISLSFLTFSPHGLLFFVGKDKDFMALELSDGGVKLSVDLGSGVGQWITESS 2972
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 336 YLKLLENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSA 515
Y + ++++VG + +E+RPR G+L SV G +Y+ +E ++ + VE+G+G
Sbjct: 3530 YAIVQKDYEVGLTFGLEVEMRPRMKNGILFSV-GVLEYITVEFVNGSIKTTVESGSGGEE 3588
Query: 516 L 518
L
Sbjct: 3589 L 3589
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 2 YNDIDWHTVTLTRNGGHGKLAVDSE 76
YND WHTV++ R H K+ +D E
Sbjct: 2974 YNDGKWHTVSIVREEKHVKIMIDGE 2998
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 381 ISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSALRTNSA 533
IS+ + GLL V KD+M LEL D V +V+ G+G T S+
Sbjct: 2922 ISLSFLTFSPHGLLFFVGKDKDFMALELSDGGVKLSVDLGSGVGQWITESS 2972
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 336 YLKLLENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSA 515
Y + ++++VG + +E+RPR G+L SV G +Y+ +E ++ + VE+G+G
Sbjct: 1344 YAIVQKDYEVGLTFGLEVEMRPRMKNGILFSV-GVLEYITVEFVNGSIKTTVESGSGGEE 1402
Query: 516 L 518
L
Sbjct: 1403 L 1403
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 2 YNDIDWHTVTLTRNGGHGKLAVDSE 76
YND WHTV++ R H K+ +D E
Sbjct: 788 YNDGKWHTVSIVREEKHVKIMIDGE 812
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 381 ISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSALRTNSA 533
IS+ + GLL V KD+M LEL D V +V+ G+G T S+
Sbjct: 736 ISLSFLTFSPHGLLFFVGKDKDFMALELSDGGVKLSVDLGSGVGQWITESS 786
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 336 YLKLLENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSA 515
Y + ++++VG + +E+RPR G+L SV G +Y+ +E ++ + VE+G+G
Sbjct: 3530 YAIVQKDYEVGLTFGLEVEMRPRMKNGILFSV-GVLEYITVEFVNGSIKTTVESGSGGEE 3588
Query: 516 L 518
L
Sbjct: 3589 L 3589
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 2 YNDIDWHTVTLTRNGGHGKLAVDSE 76
YND WHTV++ R H K+ +D E
Sbjct: 2974 YNDGKWHTVSIVREEKHVKIMIDGE 2998
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 381 ISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSALRTNSA 533
IS+ + GLL V KD+M LEL D V +V+ G+G T S+
Sbjct: 2922 ISLSFLTFSPHGLLFFVGKDKDFMALELSDGGVKLSVDLGSGVGQWITESS 2972
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 336 YLKLLENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSA 515
Y + ++++VG + +E+RPR G+L SV G +Y+ +E ++ + VE+G+G
Sbjct: 3530 YAIVQKDYEVGLTFGLEVEMRPRMKNGILFSV-GVLEYITVEFVNGSIKTTVESGSGGEE 3588
Query: 516 L 518
L
Sbjct: 3589 L 3589
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 2 YNDIDWHTVTLTRNGGHGKLAVDSE 76
YND WHTV++ R H K+ +D E
Sbjct: 2974 YNDGKWHTVSIVREEKHVKIMIDGE 2998
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 381 ISMEVRPRNTTGLLLSVHGKKDYMVLELLDSEVVANVENGNGPSALRTNSA 533
IS+ + GLL V KD+M LEL D V +V+ G+G T S+
Sbjct: 2922 ISLSFLTFSPHGLLFFVGKDKDFMALELSDGGVKLSVDLGSGVGQWITESS 2972
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 5 NDIDWHTVTLTRNGGHGKLAVDSEMVGETSVT-CNTPLSLAPPYYYGGLRYVNDRISKIF 181
ND WH +T+ + KL +DS +G +T C TP + Y GG V R + F
Sbjct: 2994 NDGQWHDITVEKKNRSLKLIIDS--LGPVEMTDCPTPKVMKKRVYVGG---VISRHRRQF 3048
Query: 182 DNFYQPFMGCLKGLLMNGQ 238
GC++ MN +
Sbjct: 3049 GLTTPGLDGCIRDFEMNNR 3067
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 5 NDIDWHTVTLTRNGGHGKLAVDSEMVGETSVT-CNTPLSLAPPYYYGGLRYVNDRISKIF 181
ND WH +T+ + KL +DS +G +T C TP + Y GG V R + F
Sbjct: 2994 NDGQWHDITVEKKNRSLKLIIDS--LGPVEMTDCPTPKVMKKRVYVGG---VISRHRRQF 3048
Query: 182 DNFYQPFMGCLKGLLMNGQ 238
GC++ MN +
Sbjct: 3049 GLTTPGLDGCIRDFEMNNR 3067
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 5 NDIDWHTVTLTRNGGHGKLAVDSEMVGETSVT-CNTPLSLAPPYYYGGLRYVNDRISKIF 181
ND WH +T+ + KL +DS +G +T C TP + Y GG V R + F
Sbjct: 2994 NDGQWHDITVEKKNRSLKLIIDS--LGPVEMTDCPTPKVMKKRVYVGG---VISRHRRQF 3048
Query: 182 DNFYQPFMGCLKGLLMNGQ 238
GC++ MN +
Sbjct: 3049 GLTTPGLDGCIRDFEMNNR 3067
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 378 SISMEVRPRNTTGLLL----SVHGKKDYMVLELLDSEVVANVENGNGPSALRTNS 530
S+S R ++ GL+L H DY+ EL+DS + + G+G L+T S
Sbjct: 490 SLSFHFRTTSSDGLILYHGVMQHNATDYVAFELIDSHLFMIINLGSGVVRLQTTS 544
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +2
Query: 5 NDIDWHTVTLTRNGGHGKLAVDSEMVGETSVTCNTPLSLAPPYYYGGLRYVNDRI--SKI 178
+D +WH V L R G + VD+ + ++ + L + P + G + N + S +
Sbjct: 548 SDGEWHHVQLDRLSRTGSVIVDAIKIDFSTPGVSANLIIDDPIFIGNVPN-NSLVYPSSV 606
Query: 179 FDNFYQP-FMGCLKGLLMNG 235
+ Q + GC+K + MNG
Sbjct: 607 WSIALQKGYTGCIKNIRMNG 626
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 20 HTVTLTRNGGHGKLAVDS-EMVGETSVTCNTPLSLAPPYYYGGLRYVNDRISKIFDNFYQ 196
H+V R G G++ +D+ V S L++ + GG+ ++ +F N
Sbjct: 3272 HSVRFERKGREGQMRIDNYREVDGRSTGILAMLNVDGNIFVGGVPDISKATGGLFSN--- 3328
Query: 197 PFMGCLKGLLMNGQQVTRIAT 259
F+GC+ + +NG ++ +AT
Sbjct: 3329 NFVGCIADVELNGVKLDLMAT 3349
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 20 HTVTLTRNGGHGKLAVDS-EMVGETSVTCNTPLSLAPPYYYGGLRYVNDRISKIFDNFYQ 196
H+V R G G++ +D+ V S L++ + GG+ ++ +F N
Sbjct: 3272 HSVRFERKGREGQMRIDNYREVDGRSTGILAMLNVDGNIFVGGVPDISKATGGLFSN--- 3328
Query: 197 PFMGCLKGLLMNGQQVTRIAT 259
F+GC+ + +NG ++ +AT
Sbjct: 3329 NFVGCIADVELNGVKLDLMAT 3349
>AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlecan
protein.
Length = 925
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 20 HTVTLTRNGGHGKLAVDS-EMVGETSVTCNTPLSLAPPYYYGGLRYVNDRISKIFDNFYQ 196
H+V R G G++ +D+ V S L++ + GG+ ++ +F N
Sbjct: 822 HSVRFERKGREGQMRIDNYREVDGRSTGILAMLNVDGNIFVGGVPDISKATGGLFSN--- 878
Query: 197 PFMGCLKGLLMNGQQVTRIAT 259
F+GC+ + +NG ++ +AT
Sbjct: 879 NFVGCIADVELNGVKLDLMAT 899
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 8 DIDWHTVTLTRNGGHGKLAVDSEMVGETSVT-CNTPLSLAPPYYYGGLRYVNDRISKIFD 184
D WH+V+ R +L VDS+ + + + L Y GG ++ K
Sbjct: 1387 DNHWHSVSFRRKERKCELWVDSKKILHVVASPGDVNLDSNGLVYLGGANPKKHKLLKSL- 1445
Query: 185 NFYQPFMGCLKGLLMNGQQV 244
N F+GC+K L + G +V
Sbjct: 1446 NLSNKFVGCVKNLKIFGAEV 1465
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 8 DIDWHTVTLTRNGGHGKLAVDSEMVGETSVT-CNTPLSLAPPYYYGGLRYVNDRISKIFD 184
D WH+V+ R +L VDS+ + + + L Y GG ++ K
Sbjct: 1377 DNHWHSVSFRRKERKCELWVDSKKILHVVASPGDVNLDSNGLVYLGGANPKKHKLLKSL- 1435
Query: 185 NFYQPFMGCLKGLLMNGQQV 244
N F+GC+K L + G +V
Sbjct: 1436 NLSNKFVGCVKNLKIFGAEV 1455
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 382 YQWRYVPVTPRG--CCSASTGRRTTWCWSCSTAKW 480
+ W+ +P TP+ SAS G RT WC + W
Sbjct: 283 FSWKSIP-TPKNKAVISASIGTRTMWCITADGCVW 316
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 683 PMYSAEMRVRRCVRAESRGFEK*PSTPTRPRTEISRRESCASFRRTGNV 537
P ++ E R R + RG +P+R RT RR+ +S RR G +
Sbjct: 110 PSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRGPI 158
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 683 PMYSAEMRVRRCVRAESRGFEK*PSTPTRPRTEISRRESCASFRRTGNV 537
P ++ E R R + RG +P+R RT RR+ +S RR G +
Sbjct: 131 PSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRGPI 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,713,880
Number of Sequences: 27780
Number of extensions: 286699
Number of successful extensions: 1032
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -