Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40218
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ...    29   2.2  
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ...    29   2.2  
At3g55660.1 68416.m06184 expressed protein contains Pfam profile...    29   2.9  
At3g59630.1 68416.m06653 diphthamide synthesis DPH2 family prote...    29   3.8  
At3g46140.1 68416.m04993 protein kinase-related contains eukaryo...    28   6.7  
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    28   6.7  
At5g58960.2 68418.m07386 expressed protein contains Pfam profile...    27   8.9  
At5g58960.1 68418.m07385 expressed protein contains Pfam profile...    27   8.9  

>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein. Closest
           Col-0 homolog to RPP8
          Length = 908

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 284 ITSKXRLLRSIEQYTQQLFEVARELQSWGRGVYINGGTS 400
           +T + ++   IE  T+++ EV  E+QS+G    I+GG S
Sbjct: 102 LTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRS 140


>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein. Closest
           Col-0 homolog to RPP8
          Length = 908

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 284 ITSKXRLLRSIEQYTQQLFEVARELQSWGRGVYINGGTS 400
           +T + ++   IE  T+++ EV  E+QS+G    I+GG S
Sbjct: 102 LTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRS 140


>At3g55660.1 68416.m06184 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 579

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 351 ENFKVGDEVSISMEVRPRNTTGLLLSVHGKKDYMVLELLDS 473
           +NF  G+++ + M  RPR+     L    K D M++E+LDS
Sbjct: 188 QNFPNGNKIEV-MNCRPRSDLFTCLPALRKLDNMLIEILDS 227


>At3g59630.1 68416.m06653 diphthamide synthesis DPH2 family protein 
           contains InterPro accession IPR002728: Diphthamide
           synthesis DPH2 protein
          Length = 491

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 53  GKLAVDSEMVGETSVTCNTPLSLAPPYYYGGLRYVN 160
           G L +DSE V     TC +P S+ P ++  G   +N
Sbjct: 76  GALHIDSECVVHYGQTCLSPTSVLPAFFVFGKASIN 111


>At3g46140.1 68416.m04993 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 376

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 287 TSKXRLLRSIEQYTQQLFE-VARELQSWGRGVYINGGT 397
           T K    RS+E+ T+Q+F+ V R+  SW +  ++  G+
Sbjct: 69  TPKSSSSRSVEEITKQVFDGVVRKSSSWIKSEFLGRGS 106


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
            domain-containing protein similar to SP|Q9XGW1 PINHEAD
            protein (ZWILLE protein) {Arabidopsis thaliana}; contains
            Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain
          Length = 990

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 89   TSVTCNTPLSLAPPYYYGGLRYVNDRI 169
            T V C  P+S+ PP YY  L     R+
Sbjct: 921  TFVRCTKPISIVPPAYYAHLAAYRGRL 947


>At5g58960.2 68418.m07386 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 484

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 441 KDYMVLELLDSEVVANVENGNGPSALRTNSATNITCATE 557
           KD  +  L +   VA++ NGNG    R  S+  + C T+
Sbjct: 181 KDTEIENLKEKVKVASMANGNGGKKHRLLSSRKVNCTTQ 219


>At5g58960.1 68418.m07385 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 559

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 441 KDYMVLELLDSEVVANVENGNGPSALRTNSATNITCATE 557
           KD  +  L +   VA++ NGNG    R  S+  + C T+
Sbjct: 256 KDTEIENLKEKVKVASMANGNGGKKHRLLSSRKVNCTTQ 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,795,947
Number of Sequences: 28952
Number of extensions: 267241
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)