Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40217
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      28   1.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.2  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    26   5.6  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    26   7.4  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   9.8  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   9.8  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 190 QSLSSFQL*EGLSRPKTEMQLMLWLSMESSVVVLQTERQRNH 65
           +SL S ++ EG++  + E Q    +  +SS VV+ +E+Q+ +
Sbjct: 10  ESLGSDEIFEGVNLDELEQQAQTQVQAQSSQVVVPSEKQKQN 51


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 109  PWKAITLAAFLFLVGTILLIV 171
            PWK +T+A FLFL   I++++
Sbjct: 2179 PWKMLTIAFFLFLSMWIIMLM 2199


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 97  PPKIPWKAITLAAFLFLVGTILLIVGSLIV 186
           P  +P+  I + +F FL+ T+LL + S+ V
Sbjct: 2   PQLVPFYFINILSFGFLIFTVLLYISSVYV 31


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 804 GLTPPLPQLTGKPGPQVLGFGYFTGGPLPITNILKS 697
           G+ PP PQ       QVL      G   PI N +KS
Sbjct: 105 GIKPPKPQFEPVANSQVLNKDVNNGNNAPIKNGVKS 140


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 71  KPLSSLDTRRYPSFDLPNRSL 9
           K L   D   YPS+DLP+R+L
Sbjct: 570 KRLPESDYLLYPSYDLPDRNL 590


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 118 AITLAAFLFLVGTILLIVGSLIVTGHIDTKYSDRLWPMIILGGIMFFLEL 267
           A+   AF  + G     + S +VT H DT +   LW ++I+   +  L++
Sbjct: 182 ALIFYAFFVVSGADFGPIISSLVTEHSDTAWRWPLWTIVIIECFILTLDV 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,695
Number of Sequences: 5004
Number of extensions: 68769
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)