Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40217
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0187 - 1387128-1387210,1387532-1387805                           44   1e-04
11_01_0187 - 1474695-1474774,1475183-1475456                           44   1e-04
02_01_0568 - 4184544-4184665,4185386-4185575                           41   0.001
05_06_0282 + 26915249-26915881                                         31   1.1  

>12_01_0187 - 1387128-1387210,1387532-1387805
          Length = 118

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
 Frame = +1

Query: 58  DDSGFSD---AQFEAPPP---KIPWKAITLAAFLFLVGTILLIVGSLIVTGHIDTKYSDR 219
           DDS  +D    +F   P    KIPWK+I LA FL L+G  LL +   I TGH++   S +
Sbjct: 19  DDSNLTDDVDLRFTYTPKSLRKIPWKSIALALFLLLLGCSLLFLSYFIFTGHMEGDNS-Q 77

Query: 220 LWPMIILGGIMF 255
            + ++ LG + F
Sbjct: 78  AYGLLFLGILAF 89


>11_01_0187 - 1474695-1474774,1475183-1475456
          Length = 117

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
 Frame = +1

Query: 58  DDSGFSD---AQFEAPPP---KIPWKAITLAAFLFLVGTILLIVGSLIVTGHIDTKYSDR 219
           DDS  +D    +F   P    KIPWK+I LA FL L+G  LL +   I TGH++   S +
Sbjct: 19  DDSNLTDDVDLRFTYTPKSLRKIPWKSIALALFLLLLGCSLLFLSYFIFTGHMEGDNS-Q 77

Query: 220 LWPMIILGGIMF 255
            + ++ LG + F
Sbjct: 78  AYGLLFLGILAF 89



 Score = 35.5 bits (78), Expect = 0.051
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 255 LPGAYHIRIAYCAYKQYPGYSFTDIPEF 338
           LPG Y  R+AY + +  PGY+F  IP++
Sbjct: 90  LPGFYETRVAYYSSRGAPGYTFASIPDY 117


>02_01_0568 - 4184544-4184665,4185386-4185575
          Length = 103

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +3

Query: 255 LPGAYHIRIAYCAYKQYPGYSFTDIP 332
           +PG Y+ RIAY AYK Y G+SF++IP
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIP 101


>05_06_0282 + 26915249-26915881
          Length = 210

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 22  GRSNDGYRLVSNDDSGFSDAQFEAPPP 102
           GRS+    ++S+DD G S  Q+ APPP
Sbjct: 111 GRSSTRPLMISDDDGGVSGRQWPAPPP 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,757,103
Number of Sequences: 37544
Number of extensions: 454498
Number of successful extensions: 1029
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)