Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40217
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.069
SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)          29   6.0  
SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = -1

Query: 389 LHVTYLNLKYSEILVLIKFWNVCKTISWILLICAVRYPYVISSRKNIMPPKMIIGHNLSE 210
           L V + N +Y  +LV +   ++ KTI W+L+ C V++  +  +RK +   + ++G N  E
Sbjct: 191 LSVNHWNHEY--MLVKLGVRDIRKTIDWLLVKCKVKFLTIEKTRKRVEVTQELVGSNARE 248


>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 53  PMMIVVSLTLSLKHHHRRFHGKP 121
           P+++   LT++ KHHHR  H  P
Sbjct: 695 PLLLSNHLTINTKHHHRYIHRDP 717


>SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)
          Length = 699

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = -3

Query: 432 IQLKLTTLFRKMICVACYLFESQIQ*DTSANQIL-------ECL*NYILDTAYMRSTLSL 274
           +Q KL+ L  ++I   C LF++ I   T+AN+ L       EC     L   ++R   S 
Sbjct: 314 VQSKLSEL--RLIPGMCELFDNIIWQHTNANRGLMEIEGDHECTPETALKIQFLRLVHSF 371

Query: 273 CDKLQEEHYAS*NDHRPQPI*IFCVN---VTSHYQASNYKKDCPDQK 142
           CD+ + +H         + I I+  N   V S+  A N K+ C  +K
Sbjct: 372 CDRHENKHLLLSPREVDELIDIYRQNDREVPSNLLAINKKRCCTGEK 418


>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 356 EILVLIKFWNVCKTISWILLICAVRYPYVISSRKNI 249
           E  V IK WN   T++W  L C  + PYV    +++
Sbjct: 126 EDCVQIKIWN--NTVTWADLGCETKLPYVCEKSRDL 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,994,711
Number of Sequences: 59808
Number of extensions: 525541
Number of successful extensions: 1233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)