Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40217
(818 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g29170.1 68416.m03655 expressed protein contains Pfam PF05915... 43 2e-04
At4g29850.1 68417.m04249 expressed protein contains Pfam PF05915... 41 0.001
At2g19350.1 68415.m02258 expressed protein 41 0.001
At4g33020.1 68417.m04697 metal transporter, putative (ZIP9) iden... 33 0.23
At2g10460.1 68415.m01099 hypothetical protein includes At2g05890... 29 3.7
At4g14165.1 68417.m02187 F-box family protein-related similar to... 29 4.9
At2g45970.1 68415.m05715 cytochrome P450, putative 29 4.9
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con... 29 4.9
At5g59470.1 68418.m07453 PQ-loop repeat family protein / transme... 28 6.5
At4g08593.1 68417.m01414 expressed protein ; expression supporte... 28 8.6
At3g03090.1 68416.m00305 sugar transporter family protein simila... 28 8.6
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 28 8.6
>At3g29170.1 68416.m03655 expressed protein contains Pfam PF05915:
Eukaryotic protein of unknown function (DUF872)
Length = 121
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +1
Query: 76 DAQFEAPPP---KIPWKAITLAAFLFLVGTILLIVGSLIVTGHIDTKYSDRLWPMIILGG 246
D +F+ P ++PWK+I LA FL +G +LL++ I GH++ S + + +++LG
Sbjct: 32 DPRFDYSPKAFDRVPWKSIALAVFLLFLGCLLLLLSFFIFIGHMEGD-SSQGYALLVLGI 90
Query: 247 IMF 255
+ F
Sbjct: 91 LTF 93
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 255 LPGAYHIRIAYCAYKQYPGYSFTDIPEF 338
LPG Y RIAY +++ GY F IP +
Sbjct: 94 LPGFYETRIAYYSWRGAEGYRFAAIPSY 121
>At4g29850.1 68417.m04249 expressed protein contains Pfam PF05915:
Eukaryotic protein of unknown function (DUF872)
Length = 103
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 255 LPGAYHIRIAYCAYKQYPGYSFTDIP 332
+PG Y+ RIAY AYK Y G+SF++IP
Sbjct: 76 IPGFYYTRIAYYAYKGYKGFSFSNIP 101
>At2g19350.1 68415.m02258 expressed protein
Length = 103
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 255 LPGAYHIRIAYCAYKQYPGYSFTDIP 332
+PG Y+ RIAY AYK Y G+SF++IP
Sbjct: 76 IPGFYYTRIAYYAYKGYKGFSFSNIP 101
>At4g33020.1 68417.m04697 metal transporter, putative (ZIP9)
identical to putative metal transporter ZIP9
[Arabidopsis thaliana] gi|17385790|gb|AAL38435; similar
to Zn and Cd transporter ZNT1 [Thlaspi caerulescens]
gi|7381054|gb|AAF61374; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 344
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 64 SGFSDAQFEAPPPKIPWKAITLAAFLFLVGTILLIVGSLIVTGHIDTK 207
SG S A + P+ PWK F +V +L ++ ++TG+ + K
Sbjct: 49 SGGSKALSDPCLPEFPWKMFPFPEFFAMVAALLTLLADFMITGYYERK 96
>At2g10460.1 68415.m01099 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 352
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 371 NLKYSEILVLIKFWNVCKTISWILLICAVRYPYVIS--SRKNIMPPKMIIGHNLSEYFVS 198
+LKY V + C T+S L + ++ ++S + NI+ I+ ++ V
Sbjct: 69 DLKYKIGFVFKTTISPCDTVSDALFLSLAKFDVILSRSANSNILHDSRIVSNSFDVSQVF 128
Query: 197 M*PVTIKLPTIRRIVPTKNRNAANVMAFH 111
+ P +L ++ +PT + +FH
Sbjct: 129 VDPTLAELGLFKQSIPTDGLTLGSSGSFH 157
>At4g14165.1 68417.m02187 F-box family protein-related similar to
F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 268
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 79 AQFEAPPPKIPWKAITLAAFLFLVGTILLI 168
+QF PPP PWK + + + G +L +
Sbjct: 149 SQFGPPPPSNPWKVLATKLVVTVTGKVLKV 178
>At2g45970.1 68415.m05715 cytochrome P450, putative
Length = 537
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 746 NPRTCGPGLPVN 781
+PRTC PGLPVN
Sbjct: 195 DPRTCAPGLPVN 206
>At1g53470.1 68414.m06061 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 881
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 353 ILVLIKFWNVCKTISWILLICAVRYPYVISSRKNIMPPKMII 228
+LV+ F N CKTI ++ V +P+ + R I +MI+
Sbjct: 676 LLVVFVFGNSCKTIFEAVIFVFVMHPFDVGDRCEIDGVQMIV 717
>At5g59470.1 68418.m07453 PQ-loop repeat family protein /
transmembrane family protein similar to SP|Q60441
Mannose-P-dolichol utilization defect 1 protein
(Suppressor of Lec15 and Lec35 glycosylation mutation)
(SL15) {Cricetulus griseus}; contains Pfam profile
PF04193: PQ loop repeat
Length = 239
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 209 YFVSM*PVTIKLPTIRRIVPTKNRNAANVMAF 114
YF+ +T+KLP I +IV K+ +V+AF
Sbjct: 36 YFLVAASMTVKLPQIMKIVDNKSVKGLSVVAF 67
>At4g08593.1 68417.m01414 expressed protein ; expression supported
by MPSS
Length = 270
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 206 NIQIGCGL*SF*EA*CSSWSLS-HKDSVLRI 295
N+++GCGL S A S W +S H+ S LRI
Sbjct: 30 NLEVGCGLQSCKVATPSVWPISYHEGSALRI 60
>At3g03090.1 68416.m00305 sugar transporter family protein similar
to xylose permease [Bacillus megaterium] GI:1924928;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 503
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +1
Query: 115 KAITLAAFLFLVGTILLIVG---SLIVTGHI 198
K + LAAFL+LVG I+ +V S+++ G +
Sbjct: 122 KELILAAFLYLVGAIVTVVAPVFSILIIGRV 152
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 694 PLTFVYPIWNNINLTVFLTVPPQSHCAVC 608
PL YP +L ++L+ P HC +C
Sbjct: 33 PLEITYPSHPQHSLQIYLSTKPFEHCILC 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,566,772
Number of Sequences: 28952
Number of extensions: 365125
Number of successful extensions: 892
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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