Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40216
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.3  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    26   5.7  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   10.0 

>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 128 RILYELFGKNSQSIFYEV*NLKREEGTN 45
           RILY LF KN   +   + NLK E+ TN
Sbjct: 248 RILYMLFTKNRSEMNSLLANLKEEDKTN 275


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 63  KRRRNESLPQKVNI 22
           KRRRNESL QK N+
Sbjct: 293 KRRRNESLIQKANV 306


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   SISGTMFTFCGRDSFLLLFLNFILHKICFANFF 106
           S++G +F F       +  L F L +ICF  FF
Sbjct: 250 SVAGEIFEFFTTMRQSITALPFTLKRICFVQFF 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,733
Number of Sequences: 5004
Number of extensions: 67291
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)