Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40216
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 772  ATGPFTHLPHPTHLQ*VSFFFYTRNSPRNLIYGKTMFAGTASII*K*IAVR 620
            A G  T    P  L+  S  F   +SP N + GKT+      +I K I+V+
Sbjct: 908  AQGFATAASSPGLLERASPAFSGTSSPTNSLVGKTVAVNFRDVIAKSISVK 958


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 286 FFIKVNLIHWMSYEIRN*KENVHLKSSH 203
           FF+ +N+ +W +Y  R+ + N +  +S+
Sbjct: 434 FFLAINVFYWFAYLSRSERINYYNVNSN 461


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 226 NVHLKSSHSAEHINTFEPVLKFRKIIFRAS 137
           N   +    A HIN+   + K  +I+F AS
Sbjct: 450 NCRKRGEKIARHINSVSYIDKVARIVFPAS 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,752
Number of Sequences: 438
Number of extensions: 4233
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)