Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40215
         (835 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   5.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.1  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 143  HHTACLVIKAFGRIIITNMFDRFAHNFLII 54
            HH    +IK+F  I    +   F  NFLII
Sbjct: 1308 HHHLSKLIKSFNEIYGVPLLLFFGLNFLII 1337


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 248 CITEHQALVSCPNFLVIS 195
           C+   Q L  CPN LV +
Sbjct: 48  CVNGQQELYDCPNGLVFA 65


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 547 HINPCGLFIIGGPQSDAG 600
           H+NP    ++GG   D G
Sbjct: 56  HVNPTANHVMGGAVPDVG 73


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 441 SDTTTV*TLCGTVAPPANTYS--QVTCV 364
           SD+TT+ T    ++P   TYS   ++CV
Sbjct: 8   SDSTTMATSSNAMSPMTPTYSMNSMSCV 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,683
Number of Sequences: 336
Number of extensions: 4862
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22932949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)