Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40215
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   133   3e-32
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   1.9  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   7.6  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   7.6  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   7.6  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  133 bits (321), Expect = 3e-32
 Identities = 56/84 (66%), Positives = 74/84 (88%)
 Frame = +3

Query: 3   KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
           KTGMV++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G
Sbjct: 48  KTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQG 107

Query: 183 VHENRNDEEVGAGDQGLMFGYATD 254
           +H  +  EE+GAGDQG+MFGYATD
Sbjct: 108 LHYEKALEELGAGDQGIMFGYATD 131



 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 46/83 (55%), Positives = 60/83 (72%)
 Frame = +2

Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
           T E +PLT++LAHKLN  ++  RR+G   W RPD+KTQVT EY    GA +P+RV T+VV
Sbjct: 133 TPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVV 192

Query: 437 SLQHSEKITLETLRDEIREKVIK 505
           S QH++ I+ E LR EI EK+IK
Sbjct: 193 SAQHADSISTEDLRSEILEKIIK 215



 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 43/69 (62%), Positives = 49/69 (71%)
 Frame = +1

Query: 511 IPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKV 690
           +PA  LDE+TV HI P G F++GGPQ DAGLTGRKIIVDTY             KD++KV
Sbjct: 218 VPAHLLDEKTVYHIQPSGRFVVGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKV 277

Query: 691 DRSAAYAAR 717
           DRSAAYAAR
Sbjct: 278 DRSAAYAAR 286


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 427 SMNSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 305
           S +SL D  TT ++IF+ NL   +W   P    +I P+  N L
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 264 SSVYLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVI 160
           S +YL  +R+S   L   LP  FC + P  +  +I
Sbjct: 106 SGLYLQRHRSSDENLNTDLPHIFCLNDPLDELTLI 140


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 146 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 21
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 42  KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 161
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,567,356
Number of Sequences: 5004
Number of extensions: 74123
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)