Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40215
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 106 2e-23
01_02_0051 - 10655867-10657057 104 8e-23
01_03_0090 - 12347165-12348349 101 7e-22
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339... 29 3.5
08_01_0388 + 3432177-3433154 29 4.6
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 29 4.6
02_01_0375 + 2712289-2712957 29 4.6
01_03_0011 + 11630506-11630853 29 6.0
>05_01_0264 + 2030080-2031270
Length = 396
Score = 106 bits (254), Expect = 2e-23
Identities = 49/86 (56%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
KT MV++ GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA G
Sbjct: 50 KTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQG 109
Query: 183 VHEN--RNDEEVGAGDQGLMFGYATD 254
VH + + EE+GAGDQG MFGYATD
Sbjct: 110 VHGHFTKRPEEIGAGDQGHMFGYATD 135
Score = 94.3 bits (224), Expect = 1e-19
Identities = 45/81 (55%), Positives = 51/81 (62%)
Frame = +1
Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
VIP QYLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY KD TK
Sbjct: 221 VIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTK 280
Query: 688 VDRSAAYAARXGRQVARQGGL 750
VDRS AY AR + GL
Sbjct: 281 VDRSGAYVARQAAKSIVASGL 301
Score = 90.6 bits (215), Expect = 1e-18
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +2
Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
T E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++
Sbjct: 137 TPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLI 196
Query: 437 SLQHSEKITLETLRDEIREKVIK 505
S QH E +T + + +++E VIK
Sbjct: 197 STQHDETVTNDEIAADLKEHVIK 219
>01_02_0051 - 10655867-10657057
Length = 396
Score = 104 bits (250), Expect = 8e-23
Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
KT MV++ GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA G
Sbjct: 50 KTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQG 109
Query: 183 VHEN--RNDEEVGAGDQGLMFGYATD 254
VH + + EE+GAGDQG MFGYATD
Sbjct: 110 VHGHFTKRPEEIGAGDQGHMFGYATD 135
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/81 (55%), Positives = 51/81 (62%)
Frame = +1
Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
VIP QYLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY KD TK
Sbjct: 221 VIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTK 280
Query: 688 VDRSAAYAARXGRQVARQGGL 750
VDRS AY AR + GL
Sbjct: 281 VDRSGAYIARQAAKSIVANGL 301
Score = 90.6 bits (215), Expect = 1e-18
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +2
Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
T E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++
Sbjct: 137 TPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLI 196
Query: 437 SLQHSEKITLETLRDEIREKVIK 505
S QH E +T + + +++E VIK
Sbjct: 197 STQHDETVTNDEIAADLKEHVIK 219
>01_03_0090 - 12347165-12348349
Length = 394
Score = 101 bits (242), Expect = 7e-22
Identities = 47/86 (54%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
KT MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA G
Sbjct: 49 KTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQG 108
Query: 183 VHEN--RNDEEVGAGDQGLMFGYATD 254
VH + + EE+GAGDQG MFGYATD
Sbjct: 109 VHGHFTKRPEEIGAGDQGHMFGYATD 134
Score = 91.9 bits (218), Expect = 6e-19
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +2
Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
T E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY+ GA VP RVHTV++
Sbjct: 136 TPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAMVPVRVHTVLI 195
Query: 437 SLQHSEKITLETLRDEIREKVIK 505
S QH E +T + + +++E VIK
Sbjct: 196 STQHDETVTNDEIAADLKEHVIK 218
Score = 91.9 bits (218), Expect = 6e-19
Identities = 44/81 (54%), Positives = 51/81 (62%)
Frame = +1
Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
VIP +YLDE+T+ H+NP G F+IGGP DAGLTGRKII+DTY KD TK
Sbjct: 220 VIPDKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTK 279
Query: 688 VDRSAAYAARXGRQVARQGGL 750
VDRS AY AR + GL
Sbjct: 280 VDRSGAYIARQAAKSIVASGL 300
>12_02_0952 -
24731799-24731901,24732169-24732231,24732941-24733980,
24734094-24734339
Length = 483
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 267 HSSVYLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVI 160
H++ LLH R LLP++ RHF H QQQ +++
Sbjct: 92 HAAAPLLHRRI----LLPEVDRHFKPHRCQQQRVMV 123
>08_01_0388 + 3432177-3433154
Length = 325
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = -1
Query: 760 IPEQARLDERLGDPI-----GRRMLRSGRPW*SPCQRKRPRRAPPTRH 632
+PEQ ++E + DP GRR S P P + P PP RH
Sbjct: 101 LPEQEPVEEPVSDPAPTSRRGRRQSSSSNPTPPPPKPSDPIAPPPPRH 148
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 291 ASTTVNGMHSSVYLLHNRTSSPGLLPQLPRHFCSHAPQ 178
+S+ +NG +L +SS G L QLPR+F S P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712
>02_01_0375 + 2712289-2712957
Length = 222
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 281 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 388
VV +L++ + +++G WW RPDS EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
>01_03_0011 + 11630506-11630853
Length = 115
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 615 NHRGHVWRVGGARRGR 662
NH G VWR+G ARR R
Sbjct: 17 NHHGSVWRLGRARRHR 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,090,704
Number of Sequences: 37544
Number of extensions: 524398
Number of successful extensions: 1459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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