Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40215
(835 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 3e-36
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 2e-33
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 85 9e-17
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 32 0.66
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 0.87
SB_54173| Best HMM Match : UPAR_LY6 (HMM E-Value=2) 29 3.5
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92) 28 8.1
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 149 bits (361), Expect = 3e-36
Identities = 65/84 (77%), Positives = 78/84 (92%)
Frame = +3
Query: 3 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+IA G
Sbjct: 5 KTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDIAQG 64
Query: 183 VHENRNDEEVGAGDQGLMFGYATD 254
VH R+DE++GAGDQGLMFGYATD
Sbjct: 65 VHIGRSDEDLGAGDQGLMFGYATD 88
Score = 113 bits (271), Expect = 2e-25
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +2
Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
T+E MPLTVVLAH LN+++A+ RRNG W RPDSKTQVT EY F GG VP RVHT+V+
Sbjct: 90 TDELMPLTVVLAHGLNKRLADCRRNGSLPWVRPDSKTQVTVEYKFQGGKAVPLRVHTIVI 149
Query: 437 SLQHSEKITLETLRDEIREKVIKEL 511
S+QH I L+ +R E+ + V+KE+
Sbjct: 150 SVQHDPNIELDVMRKELMDYVVKEV 174
Score = 88.6 bits (210), Expect = 5e-18
Identities = 42/72 (58%), Positives = 49/72 (68%)
Frame = +1
Query: 502 QRVIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDF 681
+ V+P +Y+D TV H+ P G F+IGGPQ DAGLTGRKIIVDTY KD
Sbjct: 172 KEVVPEKYIDNDTVYHMQPSGSFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDP 231
Query: 682 TKVDRSAAYAAR 717
+KVDRSAAYAAR
Sbjct: 232 SKVDRSAAYAAR 243
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 140 bits (338), Expect = 2e-33
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +3
Query: 3 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
KTGM+LLCGEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA G
Sbjct: 74 KTGMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHG 133
Query: 183 VHENRNDEEVGAGDQGLMFGYATD 254
VH R +E+VGAGDQGLMFGYATD
Sbjct: 134 VHVGREEEDVGAGDQGLMFGYATD 157
Score = 120 bits (289), Expect = 1e-27
Identities = 54/83 (65%), Positives = 65/83 (78%)
Frame = +2
Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
TEE MPLTVVLAHK+NQK+AE RR+G WARPDSKTQVT EY F G +P RVHT+V+
Sbjct: 159 TEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHGRAIPLRVHTIVI 218
Query: 437 SLQHSEKITLETLRDEIREKVIK 505
S+QH IT+E LR E+ EK++K
Sbjct: 219 SVQHDPTITMENLRKELMEKIVK 241
Score = 97.5 bits (232), Expect = 1e-20
Identities = 44/70 (62%), Positives = 52/70 (74%)
Frame = +1
Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
V+P+++LDE T+ H+ P GLF+IGGPQ DAGLTGRKIIVDTY KD+TK
Sbjct: 243 VVPSKFLDEDTIFHLQPSGLFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTK 302
Query: 688 VDRSAAYAAR 717
VDRSAAYAAR
Sbjct: 303 VDRSAAYAAR 312
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 130 bits (315), Expect = 1e-30
Identities = 60/84 (71%), Positives = 69/84 (82%)
Frame = +3
Query: 3 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
KTG+VLL GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA
Sbjct: 95 KTGLVLLFGEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQT 154
Query: 183 VHENRNDEEVGAGDQGLMFGYATD 254
VH NR D+E+GAGDQGLMFGYATD
Sbjct: 155 VHLNRRDDEIGAGDQGLMFGYATD 178
Score = 89.4 bits (212), Expect = 3e-18
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = +2
Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
TEE MPLT VLAHKL ++AE R+ W PD KTQVT +Y GA +P+RVHTV++
Sbjct: 180 TEELMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYRLERGACIPERVHTVLI 239
Query: 437 SLQHSEKITLETLRDEIREKVIKEL 511
S QH+ + +E +R ++E +I +
Sbjct: 240 STQHTPDVGIEEIRHHLKETIINHV 264
Score = 85.4 bits (202), Expect = 5e-17
Identities = 41/70 (58%), Positives = 46/70 (65%)
Frame = +1
Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
VIP +YLD++T+ H+ P G FI GGP DAGLTGRKIIVDTY KD TK
Sbjct: 264 VIPEKYLDDKTIFHLLPSGQFIDGGPLGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDVTK 323
Query: 688 VDRSAAYAAR 717
VDRS AYA R
Sbjct: 324 VDRSGAYACR 333
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 84.6 bits (200), Expect = 9e-17
Identities = 45/90 (50%), Positives = 56/90 (62%)
Frame = +1
Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
V+PA++L E T+ HINP G F+IGGP DAGLTGRKIIVDTY KD +K
Sbjct: 105 VLPAEWLHEGTLYHINPTGNFVIGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSK 164
Query: 688 VDRSAAYAARXGRQVARQGGLVPVSHGCKL 777
VDRSAAY GR VA+ ++ C++
Sbjct: 165 VDRSAAY---IGRYVAKNIVAAELADKCEI 191
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +2
Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
T+ MP V AH+L ++ +ELRRNG W RPD+K+QVT + G + +V VV+
Sbjct: 26 TDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTINW--EGDS---PKVDAVVL 80
Query: 437 SLQHSEKITLETLRDEIREKVIK 505
S QH I+L+ LR+ + E +IK
Sbjct: 81 STQHDPSISLDDLREAVLENIIK 103
Score = 34.7 bits (76), Expect = 0.094
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 204 EEVGAGDQGLMFGYATD 254
E+ GAGDQGLMFGYAT+
Sbjct: 8 EDQGAGDQGLMFGYATN 24
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = +3
Query: 3 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 113
KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 54 KTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSK 90
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 261 SVYLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 151
S+ L N T+ P + PQ P H SHA + ++I G+
Sbjct: 95 SLATLGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.5 bits (68), Expect = 0.87
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 27 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 128
GEITS N+D +K+ + K I YD G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_54173| Best HMM Match : UPAR_LY6 (HMM E-Value=2)
Length = 141
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 495 FSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTYSQVTC 367
FSL +RK ++ + C+D T +CG YS V+C
Sbjct: 47 FSLNGTRKDGSPVYLQYCADHTKCDDICGNFNSTILNYSLVSC 89
>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
Length = 586
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +2
Query: 380 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKELSLH 520
E + G V + VH + + QH +K+ ++ ++ +++ K LH
Sbjct: 524 EMAYRGAELVNEHVHKQLEAKQHEDKVKMDRIKKSVKKLSEKLARLH 570
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,797,869
Number of Sequences: 59808
Number of extensions: 619339
Number of successful extensions: 1592
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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