Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40215
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati...   103   1e-22
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2...   100   1e-21
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...   100   1e-21
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...   100   1e-21
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati...    99   4e-21
At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containi...    31   0.94 
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ...    29   5.0  
At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:...    28   6.6  

>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 2 (Methionine
           adenosyltransferase 2, AdoMet synthetase 2)
           [Catharanthus roseus] SWISS-PROT:Q96552
          Length = 393

 Score =  103 bits (248), Expect = 1e-22
 Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
           KT MV++ GEIT+KANVDY+++VR+T + IG+  +  G D   C V++ ++QQSP+IA G
Sbjct: 47  KTNMVMVFGEITTKANVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQG 106

Query: 183 VHEN--RNDEEVGAGDQGLMFGYATD 254
           VH +  +  EEVGAGDQG MFGYATD
Sbjct: 107 VHGHLTKKPEEVGAGDQGHMFGYATD 132



 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 45/83 (54%), Positives = 57/83 (68%)
 Frame = +2

Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
           T E MPLT VLA KL  K+ E+R+NG   W RPD KTQVT EY+   GA VP RVHTV++
Sbjct: 134 TPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYINESGAMVPVRVHTVLI 193

Query: 437 SLQHSEKITLETLRDEIREKVIK 505
           S QH E +T + +  +++E VIK
Sbjct: 194 STQHDETVTNDEIAADLKEHVIK 216



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/81 (53%), Positives = 50/81 (61%)
 Frame = +1

Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
           VIP +YLDE+T+ H+NP G F+IGGP  DAGLTGRKII+DTY             KD TK
Sbjct: 218 VIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTK 277

Query: 688 VDRSAAYAARXGRQVARQGGL 750
           VDRS AY  R   +     GL
Sbjct: 278 VDRSGAYIVRQAAKSIVASGL 298


>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
           identical to S-adenosylmethionine synthetase 2
           (Methionine adenosyltransferase 2, AdoMet synthetase 2)
           [Arabidopsis thaliana] SWISS-PROT:P17562
          Length = 393

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
           KT MV++ GEIT+KA +DY+K+VR+T + IG+     G D   C V++ ++QQSP+IA G
Sbjct: 47  KTNMVMVFGEITTKATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQG 106

Query: 183 VHEN--RNDEEVGAGDQGLMFGYATD 254
           VH +  +  E++GAGDQG MFGYATD
Sbjct: 107 VHGHFTKRPEDIGAGDQGHMFGYATD 132



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/85 (49%), Positives = 57/85 (67%)
 Frame = +2

Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
           T E MPL+ VLA K+  ++ E+R+NG   W RPD KTQVT EY    GA VP RVHTV++
Sbjct: 134 TPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLI 193

Query: 437 SLQHSEKITLETLRDEIREKVIKEL 511
           S QH E +T + +  +++E VIK +
Sbjct: 194 STQHDETVTNDEIARDLKEHVIKPI 218



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 40/81 (49%), Positives = 50/81 (61%)
 Frame = +1

Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
           +IP +YLD++T+ H+NP G F+IGGP  DAGLTGRKII+DTY             KD TK
Sbjct: 218 IIPEKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTK 277

Query: 688 VDRSAAYAARXGRQVARQGGL 750
           VDRS AY  R   +     G+
Sbjct: 278 VDRSGAYIVRQAAKSVVANGM 298


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score =  100 bits (239), Expect = 1e-21
 Identities = 47/86 (54%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
           KT MV++ GEIT+KA VDY+K+VR+T + IG+     G D   C V++ ++QQSP+IA G
Sbjct: 47  KTNMVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQG 106

Query: 183 VHEN--RNDEEVGAGDQGLMFGYATD 254
           VH +  +  EE+GAGDQG MFGYATD
Sbjct: 107 VHGHFTKCPEEIGAGDQGHMFGYATD 132



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 42/81 (51%), Positives = 50/81 (61%)
 Frame = +1

Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
           VIP +YLDE+T+ H+NP G F+IGGP  DAGLTGRKII+DTY             KD TK
Sbjct: 218 VIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTK 277

Query: 688 VDRSAAYAARXGRQVARQGGL 750
           VDRS AY  R   +     G+
Sbjct: 278 VDRSGAYIVRQAAKSVVANGM 298



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 43/83 (51%), Positives = 56/83 (67%)
 Frame = +2

Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
           T E MPL+ VLA KL  ++ E+R+NG   W RPD KTQVT EY    GA VP RVHTV++
Sbjct: 134 TPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDKGAMVPIRVHTVLI 193

Query: 437 SLQHSEKITLETLRDEIREKVIK 505
           S QH E +T + +  +++E VIK
Sbjct: 194 STQHDETVTNDEIARDLKEHVIK 216


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score =  100 bits (239), Expect = 1e-21
 Identities = 47/86 (54%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
           KT MV++ GEIT+KA VDY+K+VR+T + IG+     G D   C V++ ++QQSP+IA G
Sbjct: 47  KTNMVMVFGEITTKATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQG 106

Query: 183 VHEN--RNDEEVGAGDQGLMFGYATD 254
           VH +  +  EE+GAGDQG MFGYATD
Sbjct: 107 VHGHFTKCPEEIGAGDQGHMFGYATD 132



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 42/81 (51%), Positives = 50/81 (61%)
 Frame = +1

Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
           VIP +YLDE+T+ H+NP G F+IGGP  DAGLTGRKII+DTY             KD TK
Sbjct: 218 VIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTK 277

Query: 688 VDRSAAYAARXGRQVARQGGL 750
           VDRS AY  R   +     G+
Sbjct: 278 VDRSGAYIVRQAAKSVVANGM 298



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 43/83 (51%), Positives = 56/83 (67%)
 Frame = +2

Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
           T E MPL+ VLA KL  ++ E+R+NG   W RPD KTQVT EY    GA VP RVHTV++
Sbjct: 134 TPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDKGAMVPIRVHTVLI 193

Query: 437 SLQHSEKITLETLRDEIREKVIK 505
           S QH E +T + +  +++E VIK
Sbjct: 194 STQHDETVTNDEIARDLKEHVIK 216


>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 3 (Methionine
           adenosyltransferase 3, AdoMet synthetase 3)
           [Lycopersicon esculentum] SWISS-PROT:P43282
          Length = 390

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 182
           KT MV++ GEIT+ A VDY+K+VR T + IG+  +  G D   C+V++ ++QQSP+IA G
Sbjct: 47  KTNMVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQG 106

Query: 183 VHEN--RNDEEVGAGDQGLMFGYATD 254
           VH +  +  E++GAGDQG MFGYATD
Sbjct: 107 VHGHLTKKPEDIGAGDQGHMFGYATD 132



 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 44/83 (53%), Positives = 56/83 (67%)
 Frame = +2

Query: 257 TEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV 436
           T E MPLT VLA KL  K+ E+R+N    W RPD KTQVT EY   GGA +P RVHTV++
Sbjct: 134 TPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDGGAMIPIRVHTVLI 193

Query: 437 SLQHSEKITLETLRDEIREKVIK 505
           S QH E +T + +  +++E VIK
Sbjct: 194 STQHDETVTNDEIAADLKEHVIK 216



 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 43/81 (53%), Positives = 50/81 (61%)
 Frame = +1

Query: 508 VIPAQYLDERTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTK 687
           VIPA+YLD+ T+ H+NP G F+IGGP  DAGLTGRKII+DTY             KD TK
Sbjct: 218 VIPAKYLDDNTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTK 277

Query: 688 VDRSAAYAARXGRQVARQGGL 750
           VDRS AY  R   +     GL
Sbjct: 278 VDRSGAYIVRQAAKSVVAAGL 298


>At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 686

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 549 VNYSSLIKILCRDNSLMTFSLISSRKVSRVIFSECCSDTTTV*TLC 412
           V Y+SLIK LC+D  +        R V R I  +C S  T +   C
Sbjct: 346 VTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYC 391


>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 602

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 576 NYKESTWINVNYSSLIKILCRDNSLMTFSLISSRKVSRVIFSECCSDTTTV*TLCGTV 403
           +Y+    ++VNY      LCR    M   L +    S +IF +C        TLCG V
Sbjct: 89  SYETKIVVDVNYGDFCTFLCRSGLNMPEYLQTIGSKSNIIFDKC--------TLCGNV 138


>At4g33200.1 68417.m04727 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]
          Length = 1522

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 172  LLLGCMRTEMTR-KLGQETRA*CSVMQQIDRRMHAVDRSACTQTQSENCRAQAKWRILVG 348
            +L  C+R + TR K   +     + + Q   R+H   RSA    QS     Q +WR  + 
Sbjct: 817  VLQSCIRADSTRLKFSHQKEHRAASLIQAHWRIHKF-RSAFRHRQSSIIAIQCRWRQKLA 875

Query: 349  KTRFK 363
            K  F+
Sbjct: 876  KREFR 880


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,104,722
Number of Sequences: 28952
Number of extensions: 409925
Number of successful extensions: 1120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)