Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40214
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   2.8  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   3.7  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   6.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.5  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   8.6  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.6  

>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 455 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 333
           QWGTD ++  ++  TR+ +Q++  F + E      +  ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 119 PGSLMTHPEITRRLC*PLSINKVPSGDDNKPPI 21
           P  +M HP++ +      S+N +P  ++NK P+
Sbjct: 765 PAKVMAHPKVVQFYKQLASVNGLPIRNENKAPV 797


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 46  LGTLFIDKGQQSLLVISGCVISDPG 120
           LGTL  DK     +++SG V+++ G
Sbjct: 571 LGTLLFDKAPYKNVIVSGLVMAEDG 595


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 629  ILRTTVRQEPGIGLKRRHVG 570
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 638 HIRILRTTVRQEPGIGLKR-----RHVGTLQEIVRVVVHGQSR 525
           H++ ++  V QE G  L R          LQE+VRVV+H   R
Sbjct: 325 HLQSIKAQVEQERGSRLGRLQELRNSFQQLQELVRVVLHENGR 367


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 33  VVIPTRDLIYRQGSTKPSCNLRMCHQRSRSP 125
           ++I  R L+YR    K   ++R+C QR   P
Sbjct: 350 IIIDDRSLLYRLTDKKFKISVRVCSQRYPYP 380


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 709 RNWNPTKKPSSKILCTLSNYGIRTI 635
           +N+ P +  S ++LC  +NY + TI
Sbjct: 434 KNYRPRRTYSGRLLCGPNNYEVSTI 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,451
Number of Sequences: 5004
Number of extensions: 60740
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)