Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40213
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 81 2e-16
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 75 7e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 65 1e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 63 3e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 62 9e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 5e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 54 2e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 54 2e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 54 2e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 52 1e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 51 1e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 50 4e-07
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 49 7e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 48 1e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 46 4e-06
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 46 6e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 6e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 45 8e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 45 1e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 44 1e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 43 3e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 41 2e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 35 0.009
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 31 0.15
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 29 0.44
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 29 0.59
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 28 1.4
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.1
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 26 5.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.2
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.5
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 80.6 bits (190), Expect = 2e-16
Identities = 34/52 (65%), Positives = 41/52 (78%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CT+VA+RGLDIPAVDWIVQ+DPP D +YIHRVGR ARG G +++ L
Sbjct: 390 LLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFL 441
Score = 49.6 bits (113), Expect = 4e-07
Identities = 26/83 (31%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 PEEVGFVDYLKESKIYVDKYE-SWDSYYNLQKKLDTAMSDSNFVNL-AIEAFEGYVRALE 429
P E+GF+ YLK +K+ ++++E + N+Q +L+ +S + ++ A + + Y++A
Sbjct: 443 PSELGFLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYA 502
Query: 430 VRKLKQIFNLLTMDLDVLARSFG 498
LK IF++ +DL +A+SFG
Sbjct: 503 SYSLKSIFDINKLDLAKVAKSFG 525
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 75.4 bits (177), Expect = 7e-15
Identities = 33/52 (63%), Positives = 39/52 (75%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
LFCTD+ +RGLD PAVDW++Q D P D + YIHRVGR AR GNA+LLL
Sbjct: 339 LFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTAR-YNRSGNALLLL 389
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 64.9 bits (151), Expect = 1e-11
Identities = 28/52 (53%), Positives = 39/52 (75%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTDVA+RGLD+P VD +VQ+D P ++Y+HR+GR AR G +G A++ L
Sbjct: 500 LLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARA-GHNGAAIMFL 550
Score = 31.9 bits (69), Expect = 0.083
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 385 NLAIEAFEGYVRAL--EVRKLKQIFNLLTMDLDVLARSFGLKES 510
N+A AF YVRA + + IFN+ + L +A+SF L+E+
Sbjct: 617 NIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKSFALREA 660
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 63.3 bits (147), Expect = 3e-11
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
LF TD+ASRGLDIP VD+++Q DPP D + HR GR R G G A++LLN
Sbjct: 313 LFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRA-GRAGVAIVLLN 364
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 370 DSNFVNLAIEAFEGYVRALEVRKLKQIFNLLTMDLDVLARSFGL 501
D + + + AF +VRA IF + +DL LA ++ L
Sbjct: 411 DRDLYDKGLRAFVSHVRAYTKHHASFIFRIKDLDLGQLATAYAL 454
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 61.7 bits (143), Expect = 9e-11
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNLR 262
L TDVASRGLDIP+V ++ FD P D ++YIHRVGR AR G G ++ ++ R
Sbjct: 312 LVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARA-GRSGESISIVTER 365
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 5e-10
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L TDVA+RGLDIP VD ++ +D P D+ YIHRVGR AR G G ++ L+
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA-GRAGKSIALV 389
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
LF TDV +RG+D P + +VQ P + ++YIHR+GR R G G A L+L
Sbjct: 347 LFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRA-GKTGEAYLIL 397
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLL 250
L CTDVA+RG+DIP+V ++ + P A+ Y+HR GR AR DG ++L+
Sbjct: 443 LVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARA-NEDGVSILM 492
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/53 (47%), Positives = 33/53 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
+ T VASRGLDIP V ++ +D P D ++Y+HR+GR R G G AV N
Sbjct: 484 MVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA-GNTGQAVAFFN 535
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLL 250
L TDVASRG+DI ++ ++ ++ P Y+HRVGR AR G G A+ L
Sbjct: 558 LLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARA-GRSGRAITL 607
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
+ TDVASRG+D+ + + +D PG+ +Y+HR+GR R GA G A
Sbjct: 423 MVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRA-GAKGTA 469
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/53 (41%), Positives = 35/53 (66%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L C+D+ +RG+DI AV+ ++ FD P +A Y+HR+GR R G G A+ ++
Sbjct: 335 LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR-FGHRGLAISFIS 386
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 48.8 bits (111), Expect = 7e-07
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L CTD+ +RG+D+ V ++ +D P + YIHR+GR R G G A+
Sbjct: 314 LICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGR-FGRKGVAI 361
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L C+D+ +RG+D+ ++ +DPP Y+HR+GR AR G +G A L+
Sbjct: 491 LVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA-GREGFAWTLV 541
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L TDVASRG+DIP + ++ +D P ++HRVGR AR G G A L+
Sbjct: 400 LVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARA-GRTGWAYSLV 450
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L T V +RGLD+ ++ +V +D P +Y+HRVGR R G G AV +
Sbjct: 722 LIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRA-GHTGVAVTFI 772
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TD+ +RG+D V ++ FD P + YIHR+GR R G G AV
Sbjct: 342 LIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRA-GNTGQAV 389
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 45.2 bits (102), Expect = 8e-06
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L TD+A RG+DIP V ++ ++ +Y HR+GR R G G A+ L
Sbjct: 570 LVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRA-GKSGTAITFL 620
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TDVA+RGLDIP V ++ P +Y+HR+GR R G A+
Sbjct: 470 LVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRA-NTKGTAI 517
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +2
Query: 107 TDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
TDV RG+DI V+ ++ +D P + Y+HRVGR R G G A+
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGR-FGTKGLAI 396
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 43.2 bits (97), Expect = 3e-05
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
L TD+ +RG+D+ V ++ +D P + YIHR+GR R
Sbjct: 312 LITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGR 351
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 119 SRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
+RGLD V ++ FD P + YIHR+GR AR G G A+
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARA-GKPGTAM 427
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPP------GDANEYIHRVGRPAR 217
L T+V +RG+D+ V+ +V +D P D Y+HR+GR R
Sbjct: 406 LVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGR 451
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
L T + GLDI VD I+ +D + R+GR R
Sbjct: 496 LIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGA 229
L T VA G+D+P+ + +++F+ +Y+ GR AR + +
Sbjct: 427 LIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR-ARAMAS 469
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.1 bits (62), Expect = 0.59
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
L T + GLDI D I+ +D I R+GR R
Sbjct: 535 LVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 465 NGSRRFSKIFWFKRKPDVDIRIGFSKKHRPRKRMAAILASQSDTKK 602
+GS F +++WF+RK +R ++K + + R + + S+ D ++
Sbjct: 94 HGSISFIRLYWFRRKFKDVVRQNRTRKFQRKLRKSLMKKSEDDEEQ 139
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 137 GYPILLTQHLYRIKAIFSGFIEFIDGWRFLSGWGHFTMGYT 15
G IL T + + +G+I GWR++ WG G T
Sbjct: 186 GIYILSTSVGTYLGPLAAGYIASSQGWRWIGWWGLIISGIT 226
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = +1
Query: 277 DYLKESKIYVDKYESWDSYYNLQKKLDTAMSDSNFVNLAIEAFEGYVRALEVRKLKQIFN 456
D L+ + + ++L +LD+ D N + + +E + E++KLK
Sbjct: 123 DILRSDEYMISVLPDDSVLFSLGDELDSDFEDDNTLEIEVENPADVSKDAEIKKLKLQNQ 182
Query: 457 LLTMDLDVLAR 489
LL L+ + +
Sbjct: 183 LLISQLEEIRK 193
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +1
Query: 283 LKESKIYVDKYESWDSYYNLQKKLDTAMSDSNFVNLAIEAFEGYVRALE--VRKLKQIFN 456
+ ++ +++ KYES+D ++ K + D +F +L + Y A+ + KLK+
Sbjct: 1103 IDDNDLFIFKYESYDIPKDISKPTCDCVYDISFGSLTFYFQKSYFNAIYDFLLKLKRFQE 1162
Query: 457 LL-TMDLDVLARSFGLKESL 513
L ++ + + +G K SL
Sbjct: 1163 LFSSIRYAIYYKLYGNKVSL 1182
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 538 LNPMRISTSGFLLNQKILLKRLDPLSTN*ISVLAF 434
L P+ IS L LLKRL P +S++AF
Sbjct: 347 LTPVGISGCAAALTTGYLLKRLKPTKIMVVSMIAF 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,930
Number of Sequences: 5004
Number of extensions: 64197
Number of successful extensions: 204
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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