Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40213
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 6e-16
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 74 1e-13
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 57 1e-08
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 56 2e-08
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 50 1e-06
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 49 3e-06
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 47 2e-05
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 47 2e-05
SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 44 1e-04
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 43 2e-04
SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11) 41 8e-04
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 41 8e-04
SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017) 40 0.002
SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017) 40 0.002
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 39 0.003
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 39 0.003
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 38 0.007
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 38 0.007
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 38 0.009
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 36 0.029
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18) 35 0.067
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 34 0.088
SB_36976| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 33 0.27
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 32 0.35
SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19) 30 1.9
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 30 1.9
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 81.4 bits (192), Expect = 6e-16
Identities = 38/58 (65%), Positives = 42/58 (72%)
Frame = +2
Query: 80 NQKI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
N K L CTDVA+RGLDIP VDWIVQ+DP D EYIHRVGR ARG G+A+L L
Sbjct: 866 NAKSGILLCTDVAARGLDIPEVDWIVQYDPADDPKEYIHRVGRTARGTEGKGHALLFL 923
Score = 32.3 bits (70), Expect = 0.35
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = +1
Query: 256 PEEVGFVDYLKESKIYVDKYESWDSYYNLQKKLDTAMSDSNFVNLAIEAFEGYVRALEVR 435
PEE+ F+ YLK +K+ + Y L K A +A++ Y++A
Sbjct: 925 PEELAFLRYLKHAKLE----RLIEKNYYLHKS-------------AKDAYKAYIQAYASH 967
Query: 436 KLKQIFNLLTMDLDVLARSFG 498
+ K IFN+ ++DL +A SFG
Sbjct: 968 QHKSIFNVNSLDLQRVALSFG 988
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 73.7 bits (173), Expect = 1e-13
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTDV +RG+DIP V+W++Q+DPP AN ++HR GR AR +G +GNAV+ L
Sbjct: 144 LVCTDVMARGVDIPEVNWVIQYDPPSSANAFVHRCGRTAR-IGNEGNAVVFL 194
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVL 247
L TDVA+RGLDIP +D +VQ +PP D + YIHR GR R G +G ++
Sbjct: 358 LVATDVAARGLDIPEIDLVVQCEPPKDVDAYIHRSGRTGRA-GREGICIV 406
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L TDVASRGLDIP V+ +V + P D +YIHRVGR AR G G A+ ++
Sbjct: 301 LVATDVASRGLDIPQVELVVNSNIPADPKDYIHRVGRTARA-GRGGMAISMV 351
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNLRKW 268
L TDVASRGLDI + +++ +D P +Y+HRVGR R G G ++ ++ W
Sbjct: 96 LIATDVASRGLDIKDITYVINYDFPRHIEDYVHRVGRTGRA-GRSGTSLTFISREDW 151
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L T VA+RGLDIP V ++ FD P D EY+HR+GR R +G G A N
Sbjct: 1154 LVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGR-VGHTGLATSFFN 1205
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
L T+VA+RGLDI V ++ FD P D +EY+HR+GR R +G G A
Sbjct: 1016 LIATNVAARGLDIDDVKHVINFDLPSDIDEYVHRIGRTGR-IGNKGKA 1062
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
L CTD+ASRGLD V ++ FD P +YIHRVGR R
Sbjct: 750 LVCTDIASRGLDTSDVSHVINFDFPNSMVDYIHRVGRTGR 789
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/58 (46%), Positives = 32/58 (55%)
Frame = +2
Query: 86 KI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNL 259
K+ L TDVASRGLD P V ++ +D P YIHR GR R +G G A L L
Sbjct: 382 KVDILVATDVASRGLDFPEVTHVINYDLPDTIECYIHRCGRTGR-IGHHGIATSFLTL 438
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +2
Query: 107 TDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
TDVA+RG+DIP +D ++ F P A ++HRVGR AR G G A L+
Sbjct: 532 TDVAARGIDIPMLDNVINFHFPPKAKLFVHRVGRVARA-GRSGTAYSLV 579
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L TDVA+RGLDI ++ ++ + P D Y+HR GR AR +G +V+L+
Sbjct: 510 LLATDVAARGLDIANIEHVIHYQVPKDPEVYVHRSGRTARA-SHEGLSVVLV 560
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L C+D+ +RG+DI +V+ ++ FD P ++ Y+HR+GR R G G A+ L+
Sbjct: 345 LVCSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGR-FGHLGVAINLI 395
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L C+D+ +RG+DI +V+ ++ FD P ++ Y+HR+GR R G G A+ L+
Sbjct: 345 LVCSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGR-FGHLGVAINLI 395
>SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +2
Query: 116 ASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
ASRGLDIP V ++Q D DA + +HRVGR AR G+ G V
Sbjct: 108 ASRGLDIPNVTHVIQLDFATDAAQMLHRVGRTARA-GSHGKVV 149
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TDV +RGLD+ V ++ +D P + YIHR+GR R G G A+
Sbjct: 290 LISTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGR-FGRKGVAI 337
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TD+ +RG+D V+ +V D P + Y+HR+GR R G +G AV
Sbjct: 268 LISTDLTARGIDAENVNLVVNMDVPHNGETYLHRIGRAGR-FGTEGMAV 315
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L TDVA RG+DI V ++ +D +Y HR+GR R G G AV L
Sbjct: 338 LVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGRA-GKTGIAVSFL 388
>SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11)
Length = 87
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L T++ RG+DI V+ + +D P D++ Y+HRV R R G G A+ ++
Sbjct: 16 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR-FGTKGLAITFVS 67
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L T++ RG+DI V+ + +D P D++ Y+HRV R R G G A+ ++
Sbjct: 389 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR-FGTKGLAITFVS 440
>SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 119 SRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
+RG+DI +V+ ++ FD P ++ Y+HR+GR R G G A+ L+
Sbjct: 4 TRGIDIQSVNVVINFDFPKNSETYLHRIGRSGR-FGHLGVAINLI 47
>SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 119 SRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
+RG+DI +V+ ++ FD P ++ Y+HR+GR R G G A+ L+
Sbjct: 4 TRGIDIQSVNVVINFDFPKNSETYLHRIGRSGR-FGHLGVAINLI 47
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGR 208
L TDVAS+GLD P + ++ FD P D Y+ G+
Sbjct: 141 LVATDVASKGLDFPDIQHVINFDMPEDIENYVLLCGQ 177
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGR 208
L TDVAS+GLD P + ++ FD P D Y+ G+
Sbjct: 141 LVATDVASKGLDFPDIQHVINFDMPEDIENYVLLCGQ 177
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 86 KI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVG 205
KI L T++ RG+D V+ ++ +D P A YIHR+G
Sbjct: 433 KIWVLIATELMGRGIDFKGVNLVINYDFPTSAVAYIHRIG 472
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 80 NQKI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
N KI + T G+DIP VD I+ F P + Y+ +GR R
Sbjct: 309 NSKIRVVVATCALGMGVDIPDVDHIIHFGIPSEVEHYVQEIGRGGR 354
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPP------GDANEYIHRVGRPARGLGADGNAV 244
L T+V++RG+D+ V ++ +D P D Y+HR+GR R G G AV
Sbjct: 398 LITTNVSARGIDVEQVTLVINYDMPMDMQGKADFETYLHRIGRTGR-FGKSGIAV 451
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 140 AVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
AV ++ FD P EY+H++GR R LGA G ++ +N
Sbjct: 396 AVSKVINFDMPPTYEEYVHQIGRAGR-LGATGWSISFIN 433
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 35.9 bits (79), Expect = 0.029
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHR 199
L TD+ +RG+D+ V ++ +D P + YIHR
Sbjct: 384 LITTDLLARGIDVHQVSLVINYDLPSNRENYIHR 417
>SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18)
Length = 282
Score = 34.7 bits (76), Expect = 0.067
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGR 208
L T V GLD+P +++V+FD P + Y+ GR
Sbjct: 148 LVATSVVEEGLDVPKCNFVVRFDFPQNFRSYVQSKGR 184
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 34.3 bits (75), Expect = 0.088
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 131 DIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
DI + +++ FD P +Y+HR+GR AR
Sbjct: 351 DISDIKFVINFDFPNCTEDYVHRIGRTAR 379
>SB_36976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 125 GLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
G+DIP VD I+ + P + Y+ +GR R
Sbjct: 2 GVDIPDVDHIIHYGIPSEVEHYVQEIGRGGR 32
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 107 TDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNL 259
T+ RGLD +D + + P + EY+H GR R G G A ++++
Sbjct: 485 TEETVRGLDFKELDHVYLMEVPKNVEEYLHLCGRVGR-QGRPGTATTVVDM 534
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L T V GLDI VD IV FD + R+GR R DG V+L+
Sbjct: 584 LVSTCVGEEGLDIGDVDLIVCFDAHASPIRLVQRMGRTGR--KRDGRIVVLV 633
>SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)
Length = 1463
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
L T V GLD+P + +V+FD + + GR +R
Sbjct: 621 LISTSVLEEGLDVPVCNLVVRFDSTMNLKSLVQSRGRASR 660
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 269 PTSSGLEVKLHYHQHPNLSPVCPLCECIHLHH 174
P+SS + +H+H HP+ S + IH HH
Sbjct: 285 PSSSSSIIIIHHHHHPSSSSSIIIIIIIHHHH 316
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 269 PTSSGLEVKLHYHQHPNLSPVCPLCECIHLHH 174
P+SS + + +H+H HP+ S + IH HH
Sbjct: 254 PSSSSIIIIIHHHHHPSSS--SSIIIIIHHHH 283
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 324 PAFVFIYIYFRFLQVIHKTHFLRFRSKTALPSAPKPLAGLP 202
P + +Y+ +RFL + +L +R +L P PL+ +P
Sbjct: 21 PVYRVLYLAYRFLYPVSLVLYLEYRVLLSLSRFPCPLSRIP 61
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +3
Query: 426 GSQKAKTDI*FVDNGSRRFSKIFWFKRKPDVDIRIGFSKKHRPRKRMAAILASQSDTKKA 605
G +AK D +DNG +W D + I ++ KH P A ++ D K
Sbjct: 1132 GPSEAKIDC--IDNGDGSCDVHYWPNEPGDYMVNILYADKHIPGSPFKARISHPFDPSKV 1189
Query: 606 KS*WDGI 626
K GI
Sbjct: 1190 KVEGPGI 1196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,236,470
Number of Sequences: 59808
Number of extensions: 449144
Number of successful extensions: 1088
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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