Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40213
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       46   4e-07
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 22/48 (45%), Positives = 30/48 (62%)
 Frame = +2

Query: 98  LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
           L  T VA+RGLDI  V  ++ +D P   +EY+HR+GR  R +G  G A
Sbjct: 505 LVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGR-VGNRGRA 551


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 566  HSFPRSMFFTKPYAYINIRLSFKPKDLAKTSRSIVNKLNICFSFLTSS--ALTYPSN 402
            HSFP       P+ Y     +F    L KTS ++  ++N  F+F+ +S   LT+  N
Sbjct: 926  HSFPTETGL--PFVY-----TFNVIKLTKTSGTVQAQINPDFAFIVNSNLRLTFSKN 975


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 283 LKESKIYVDKYESWDSYYNLQKKLDTAMSDSNFVNLAIEAFE-GYVRALEVRKLKQIFNL 459
           +K    Y+ K+++WD  YN  + +   ++ S+     +E FE   ++ LE  K K  F  
Sbjct: 255 IKGVPTYLIKWKNWDLKYNTWEPISNLINCSDI----LEEFERNRLQLLESFKRKVNFYP 310

Query: 460 LTMDLD 477
              D++
Sbjct: 311 NNQDIE 316


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -1

Query: 233 HQHPNLSPVCPLCECIH 183
           H  P+  P+C +C+ ++
Sbjct: 26  HTRPSKEPICNICKRVY 42


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = -1

Query: 557 PRSMFFTKPYAYINIRLSFKPKDLAKTSRSIVNKLNICFSFL 432
           P       P   IN      P D+ K SR +     +CF+ +
Sbjct: 381 PAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 422


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = -1

Query: 557 PRSMFFTKPYAYINIRLSFKPKDLAKTSRSIVNKLNICFSFL 432
           P       P   IN      P D+ K SR +     +CF+ +
Sbjct: 381 PAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 422


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 126 PLDATSVQNKGYIFWFH 76
           P D T  Q+   IFW H
Sbjct: 113 PADRTPSQSLPVIFWIH 129


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = -1

Query: 557 PRSMFFTKPYAYINIRLSFKPKDLAKTSRSIVNKLNICFSFL 432
           P       P   IN      P D+ K SR +     +CF+ +
Sbjct: 319 PAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 360


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 126 PLDATSVQNKGYIFWFH 76
           P D T  Q+   IFW H
Sbjct: 113 PADRTPSQSLPVIFWIH 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,822
Number of Sequences: 438
Number of extensions: 4522
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)