Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40213
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 86 2e-17
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 81 6e-16
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 71 7e-13
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 69 2e-12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 65 3e-11
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 65 3e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 62 3e-10
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 60 1e-09
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 58 4e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 57 1e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 57 1e-08
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 57 1e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 57 1e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 56 2e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 8e-08
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 54 1e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 53 1e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 53 1e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 53 2e-07
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 52 3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 4e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 52 4e-07
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 52 4e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 51 6e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 51 6e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 50 1e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 50 2e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 50 2e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 2e-06
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 50 2e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 50 2e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 50 2e-06
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 49 3e-06
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 49 3e-06
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 49 3e-06
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 49 3e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 5e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 48 5e-06
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 48 7e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 48 7e-06
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 47 1e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 47 1e-05
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 47 1e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 47 1e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 46 2e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 46 2e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 46 2e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 45 4e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 45 4e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 45 4e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 45 5e-05
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 45 5e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 45 5e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 45 5e-05
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 45 5e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 44 7e-05
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 44 9e-05
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 44 9e-05
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 44 9e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 42 4e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 41 6e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 38 0.004
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 33 0.17
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 33 0.22
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 31 0.67
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 29 2.0
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 29 2.0
At5g09360.1 68418.m01084 laccase family protein / diphenol oxida... 29 3.6
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 29 3.6
At1g79270.1 68414.m09241 expressed protein contains Pfam profile... 29 3.6
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 28 4.7
At5g53640.1 68418.m06663 F-box family protein contains F-box dom... 28 6.2
At5g10760.1 68418.m01250 aspartyl protease family protein contai... 27 8.2
At1g42367.1 68414.m04881 hypothetical protein 27 8.2
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTDVA+RGLDIP+VDWI+Q+DPP EYIHRVGR ARG GA G A+L+L
Sbjct: 388 LLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVL 439
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 PEEVGFVDYLKESKIYVDKYESWDSYY-NLQKKLDTAMS-DSNFVNLAIEAFEGYVRALE 429
PEE+ F+ YLK +K+ V + E + N+Q L+ ++ D N LA +A+ Y+ A
Sbjct: 441 PEELQFIRYLKAAKVPVKELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYN 500
Query: 430 VRKLKQIFNLLTMDLDVLARSF 495
LK IFN+ +DL +A SF
Sbjct: 501 SHSLKDIFNVHRLDLLAVAESF 522
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 81.0 bits (191), Expect = 6e-16
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CT+VA+RGLD P VDWIVQ+DPP + +YIHRVGR ARG GA G A+L+L
Sbjct: 454 LLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVL 505
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PEEVGFVDYLKESKIYVDKYESWDSYYNLQKKLDTAMSDSNFV--NLAIEAFEGYVRALE 429
P+E+ F+ YLK +KI V+++E + K + N+ A EA++ Y+ +
Sbjct: 507 PQELKFIQYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYISGYD 566
Query: 430 VRKLKQIFNLLTMDLDVLARSFGLKE 507
+K +FN+ ++L +A SFG +
Sbjct: 567 SHSMKDVFNVHQLNLTEVATSFGFSD 592
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 70.9 bits (166), Expect = 7e-13
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTDVA+RGLDIP +D++VQ+DPP D N + HR GR AR LG G A++ L
Sbjct: 332 LLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTAR-LGRQGRAIVFL 382
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 PEEVGFVDYLKESKIYVDKYE-SWDSYYNLQKKLDTAMSDSNFVNLAIEAFEGYVRALEV 432
P+E +V++++ ++ +++ + S D+ + AM D + ++AF +VRA +
Sbjct: 384 PKEEAYVEFMRIRRVPLEERKCSEDASDVIPIIRSAAMKDRAVMEKGLKAFVSFVRAYKE 443
Query: 433 RKLKQIFNLLTMDLDVLARSFGL 501
IF +++ LA +GL
Sbjct: 444 HHCSFIFRWKDLEIGKLAMGYGL 466
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTDVA+RGLDIP +D++VQ+DPP D + +IHRVGR AR + G A++ L
Sbjct: 323 LLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTAR-MERQGRAIVFL 373
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/83 (18%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 PEEVGFVDYLKESKIYVDKYESWDSYYNLQKKLDT-AMSDSNFVNLAIEAFEGYVRALEV 432
P+E +V++++ ++ + + + ++ ++ + + A+ D + ++AF +VRA +
Sbjct: 375 PKETDYVEFMRIRRVPLQERKCSENASDVIPIIRSLAIKDRAVLEKGLQAFVSFVRAYKE 434
Query: 433 RKLKQIFNLLTMDLDVLARSFGL 501
IF+ +++ LA +G+
Sbjct: 435 HHCSYIFSWKGLEIGKLAMGYGI 457
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L CTDVASRGLDIP+VD ++ +D P ++ +YIHRVGR AR G G + L+N
Sbjct: 314 LVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARA-GRSGVGISLVN 365
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/52 (59%), Positives = 38/52 (73%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L TDVA+RGLD P V I+Q+D PG+A EY+HRVGR AR +G G A+L L
Sbjct: 403 LLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTAR-IGEKGEALLFL 453
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = +2
Query: 86 KI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
K+ L TDVASRGLDIP VD ++ +D P D +Y+HRVGR AR G G AV ++
Sbjct: 352 KVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARA-GRGGLAVSII 406
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/53 (58%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +2
Query: 98 LFCTDVASRGLDIP-AVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
LFCTDV +RGLD AVDW+VQ D P D YIHRVGR AR G ++L L
Sbjct: 371 LFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTAR-FYTQGKSLLFL 422
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 PEEVGFVDYLKESKIYVDKYESWDSYYNLQKKLDTAM--SDSNFVNLAIEAFEGYVRALE 429
P E ++ L+E+K+ + ++ + +L A+ + +A AF Y+R++
Sbjct: 424 PSEEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIH 483
Query: 430 VRKLKQIFNLLTMDLDVLARSFGL 501
R+ K+IF++ + ++ + S GL
Sbjct: 484 KRRDKEIFDVSKLSIENFSASLGL 507
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTD ASRG+D VD +V FD P D +EY+ RVGR ARG G A + +
Sbjct: 698 LVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFV 749
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLL 250
L TDVASRGLDIP VD ++ ++ P D ++HR GR R G +G+A+L+
Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRA-GKEGSAILM 453
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L TDVA+RGLDIP V +V FD P D ++Y+HR+GR R G G A N
Sbjct: 462 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGIATAFFN 513
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L TDVA+RGLDIP V +V FD P D ++Y+HR+GR R G G A N
Sbjct: 462 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGIATAFFN 513
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L TDVA+RGLDIP V +V FD P D ++Y+HR+GR R G G A N
Sbjct: 472 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GKSGLATAFFN 523
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L TDVA+RGLDIP V +V FD P D ++Y+HR+GR R G G A N
Sbjct: 459 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA-GNSGLATAFFN 510
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.0 bits (124), Expect = 8e-08
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L TDVAS+GLD P + ++ +D PG+ Y+HR+GR R G G A +N
Sbjct: 402 LVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGR-CGKTGIATTFIN 453
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLL 250
L TDVA+RGLD+P VD I+ ++ P + ++HR GR R G G+A+L+
Sbjct: 402 LVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRA-GKKGSAILI 451
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/59 (45%), Positives = 40/59 (67%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNLRKWVL 274
L CTD+A+RGLD+ VD +V FD P ++ +Y+HR GR AR +GA G L++ + +L
Sbjct: 426 LVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTAR-MGAKGKVTSLVSRKDQML 482
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLL 250
L TDVA+RGLD+P VD ++ ++ P + ++HR GR R G G+A+L+
Sbjct: 414 LVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRA-GKKGSAILI 463
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +2
Query: 80 NQKI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNL 259
N K L T+VA+RGLDI V I+Q +PP + YIHR GR R G G AV L +
Sbjct: 394 NGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRA-GNTGVAVTLYDS 452
Query: 260 RK 265
RK
Sbjct: 453 RK 454
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +2
Query: 107 TDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
TDVA+RGLD+ V +++ +D PG +Y+HR+GR R GA G A
Sbjct: 401 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTA 444
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L TDVAS+GLD P + ++ +D P + Y+HR+GR R G G A +N
Sbjct: 451 LVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR-CGKTGIATTFIN 502
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTD+ +RG+DI AV+ ++ FD P +A Y+HRVGR R G G AV L+
Sbjct: 422 LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGR-FGHLGLAVNLI 472
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTD+ +RG+DI AV+ ++ FD P +A Y+HRVGR R G G AV L+
Sbjct: 422 LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGR-FGHLGLAVNLI 472
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L +DV++RG+D P V +VQ P D +YIHR+GR R G +G VLLL
Sbjct: 392 LVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR-KGKEGEGVLLL 442
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L +DV++RG+D P V +VQ P D +YIHR+GR R G +G VLLL
Sbjct: 694 LVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR-KGKEGEGVLLL 744
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +2
Query: 83 QKI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
Q++ L TDVA+RGLDI V ++ + P + + Y+HRVGR AR G +G AV
Sbjct: 461 QEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARA-GREGYAV 513
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTD+ +RG+DI AV+ ++ FD P + Y+HRVGR R G G AV L+
Sbjct: 415 LVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR-FGHLGLAVNLV 465
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTD+ +RG+DI AV+ ++ FD P + Y+HRVGR R G G AV L+
Sbjct: 415 LVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR-FGHLGLAVNLV 465
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L T VA+RGLD+ ++ +V FD P +Y+HRVGR R G G AV ++
Sbjct: 668 LIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRA-GRKGCAVTFIS 719
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNLRKW 268
L TDVA+RGLDI + ++ +D P +Y+HR+GR R GA G A + W
Sbjct: 733 LIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA-GATGVAFTFFTEQDW 788
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L CTD+ +RG+DI AV+ ++ FD P + Y+HRVGR R G G AV L+
Sbjct: 445 LVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR-FGHLGLAVNLV 495
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L T VA+RGLD+ ++ +V FD P +Y+HRVGR R G G AV ++
Sbjct: 830 LIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRA-GRKGCAVTFIS 881
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
L TDVA+RGLD+ + +V +D P +Y+HR+GR R GA G A
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA-GATGQA 502
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
L TDVA+RGLD+ + +V +D P +Y+HR+GR R GA G A
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA-GATGQA 502
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
L TDVA+RGLD+ + +V +D P +Y+HR+GR R GA G A
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA-GATGQA 502
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNLRK 265
L TDVA+RGLDI ++ +V +D D + ++HR+GR R DG A L+ R+
Sbjct: 527 LIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE 582
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L +DV++RG+D P V ++Q P D +YIHR+GR R G +G +LLL
Sbjct: 366 LVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGR-KGKEGEGILLL 416
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TDV +RG+D ++ ++ +D P A+ YIHR+GR R G G A+
Sbjct: 434 LIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRA-GRSGEAI 481
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +2
Query: 107 TDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
TDVA+RGLD+ + +V +D P +YIHR+GR R GA G A
Sbjct: 467 TDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRA-GAKGMA 510
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNA 241
L TDVA+RGLD+ + +V +D P +Y+HR+GR R GA G A
Sbjct: 527 LVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRA-GATGLA 573
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TD+ RG+DI V+ ++ +D P A+ Y+HRVGR R G G A+
Sbjct: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAI 389
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TD+ RG+DI V+ ++ +D P A+ Y+HRVGR R G G A+
Sbjct: 259 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAI 306
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TD+ RG+DI V+ ++ +D P A+ Y+HRVGR R G G A+
Sbjct: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAI 389
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 104 CTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
CTD A+RG+D+P V ++Q D A +++HR+GR AR
Sbjct: 479 CTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTAR 516
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
L TDVA+RGLDIP V+ ++ + P +Y+HR+GR R
Sbjct: 420 LVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGR 459
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/54 (42%), Positives = 28/54 (51%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNL 259
L TDV RG+DIP V ++ +D P Y HR+GR R G G A L L
Sbjct: 630 LVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRA-GKSGVATSFLTL 682
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
L TD+A+RG+DIP +D ++ +D P ++HRVGR AR
Sbjct: 325 LIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAAR 364
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L TD+ +RG+DI V I+ + P A Y+HR GR AR ADG ++ L+
Sbjct: 556 LIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAF-ADGCSIALI 606
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L +DV++RG++ P V ++Q P D +YIHR+GR R G G +LL+
Sbjct: 688 LVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGRE-GKGGKGLLLI 738
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLL 253
L +DV++RG++ P V ++Q P D +YIHR+GR R G G +LL+
Sbjct: 641 LVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGRE-GKGGEGLLLI 691
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVL 247
L TD+A+RG+D+P I FD P +Y+HR GR R +D ++
Sbjct: 395 LVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIV 444
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVL 247
L TD+A+RG+D+P I FD P +Y+HR GR R +D ++
Sbjct: 238 LVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIV 287
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L T V RG+D+ V ++ FD P EYIH +GR +R +G G A++ +N
Sbjct: 412 LVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASR-MGEKGTAIVFVN 463
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L T V RG+D+ V ++ FD P EYIH +GR +R +G G A++ +N
Sbjct: 275 LVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASR-MGEKGTAIVFVN 326
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLNL 259
L TD+ +RG+D+ V ++ FD P Y+HR+GR R G G A+ + L
Sbjct: 332 LITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGR-FGRKGVAINFVTL 384
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L +DV +RG+D+ V ++ +D P + YIHR+GR R G +G A+
Sbjct: 315 LIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGR-FGREGVAI 362
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TDV +RG+D+ V ++ +D P + YIHR+GR R G G A+
Sbjct: 328 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR-FGRKGVAI 375
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TD+ +RG+D+ V ++ FD P Y+HR+GR R G G A+
Sbjct: 332 LITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGR-FGRKGVAI 379
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
L TD+ +RG+D+ V ++ FD P Y+HR+GR R G G A+
Sbjct: 334 LITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGR-FGRKGVAI 381
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +2
Query: 80 NQKI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAV 244
N +I L ++++RGLD+ D +V + P DA Y HR GR R LG G V
Sbjct: 455 NGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGR-LGRKGTVV 508
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
L +D +RG+D+ V ++ +D P A +IHR GR AR G G LL+
Sbjct: 382 LVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARA-GQAGRCFTLLS 433
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 122 RGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGADGNAVLLLN 256
RG+D V ++ FD P YIHR+GR R + G++V L++
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAY-SSGSSVSLIS 441
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPP-------GDANEYIHRVGRPARGLGADGNAVLLLN 256
L TDV +RG D V+ +V ++ P D Y+HRVGR R G G LL
Sbjct: 394 LIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGR-FGRKGAVFNLLL 452
Query: 257 LRKWVLWIT*RNLKYM*INTK 319
W + + KY N K
Sbjct: 453 DDGWDKEVMEKIEKYFEANVK 473
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWI 154
L CTDVA+RGLDIP + +I
Sbjct: 296 LLCTDVAARGLDIPGIVYI 314
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 80 NQKI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
+ KI + T GLD V ++ F PG EY+ +GR R
Sbjct: 534 SNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGR 579
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
+ T + GLDI VD ++ FD I R+GR R
Sbjct: 531 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 570
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 80 NQKI*PLFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPAR 217
N+ + L ++ + GL+ D +V + P DA Y HR GR R
Sbjct: 663 NRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAHRAGRMRR 708
>At5g09360.1 68418.m01084 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201]
Length = 569
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 560 KNGSDFSFPK*HKES*IMMG-WHKKQ 634
K GS + FPK H+E +++G W KK+
Sbjct: 155 KRGSSYPFPKPHREIPLILGEWWKKE 180
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGR 208
+ T + GLD+ + + +++FDP + +I GR
Sbjct: 450 IVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR 486
>At1g79270.1 68414.m09241 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 528
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 241 SFTSKPEEVGF--VDYLKESKIYVD-KYESWDSYYNLQKKLDTAMSDS 375
SF +K EE F + E I+ KY W S N KKLD+A +S
Sbjct: 313 SFQTKYEEAIFFVIKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQES 360
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 98 LFCTDVASRGLDIPAVDWIVQFDPPGDANEYIHRVGRPARGLGAD 232
L T VA GLDI + +++FD YI GR AR G+D
Sbjct: 727 LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGR-ARKPGSD 770
>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
Pfam:PF00646
Length = 917
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 597 LCHFGKLKSLPFFSSVDVFY*TLCVY 520
+C + +L+SLP F + + TLC+Y
Sbjct: 785 ICKYSELESLPRFGYMSRLHVTLCIY 810
>At5g10760.1 68418.m01250 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 464
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 524 YINIRLSFKPKDLAKTSRSIVNKLNICFSFLTSSALTYPSNA-SIAKFTKLESD 366
Y +R FK K + S S + C+ F +TYP+ A S A T +E D
Sbjct: 358 YAELRSVFKEKMSSYKSTSGYGLFDTCYDFTGLDTVTYPTIAFSFAGSTVVELD 411
>At1g42367.1 68414.m04881 hypothetical protein
Length = 150
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 227 HPNLSPVCPLCECIHLHHQ 171
H SP+ P EC HLHHQ
Sbjct: 16 HHFTSPLDPEVECHHLHHQ 34
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,194,910
Number of Sequences: 28952
Number of extensions: 330951
Number of successful extensions: 900
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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