Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40212
         (670 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2ETG4 Cluster: Putative uncharacterized protein; n=4; ...    36   0.67 
UniRef50_A3D6K5 Cluster: Polysaccharide biosynthesis protein; n=...    36   0.88 
UniRef50_UPI0000D565E1 Cluster: PREDICTED: similar to CG11430-PB...    34   2.7  
UniRef50_A0M7B3 Cluster: Membrane protein; n=1; Gramella forseti...    34   3.6  
UniRef50_A5K543 Cluster: Putative uncharacterized protein; n=2; ...    33   6.2  
UniRef50_Q7QXI5 Cluster: GLP_36_54719_58159; n=1; Giardia lambli...    33   8.2  
UniRef50_Q97WD8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_A2ETG4 Cluster: Putative uncharacterized protein; n=4;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 402

 Score = 36.3 bits (80), Expect = 0.67
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 480 YYLIFISLYCFSYIFITSVAFKTV-TVEKGRRAICIKAALIPIVYSKXHRETG 635
           +Y+I I LY  + +F+T++    V T+ +G R +CI    + I YS   RE G
Sbjct: 284 FYVIVILLYNVTGMFVTNITSAVVRTILEGLRTLCIWVVQVIIFYSYSGREVG 336


>UniRef50_A3D6K5 Cluster: Polysaccharide biosynthesis protein; n=1;
           Shewanella baltica OS155|Rep: Polysaccharide
           biosynthesis protein - Shewanella baltica OS155
          Length = 404

 Score = 35.9 bits (79), Expect = 0.88
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +3

Query: 393 TLATFRRVLFAFIYFRNKISLRH-YLLLNQYYLIFISLYCFSYIFITSVAFKTVTVEK-G 566
           TL  F  VL  F+YF   + L+  +   N+Y+ IF+   CFS++    V F     +K  
Sbjct: 79  TLQIFFTVLSVFLYFFFSLLLKFTFNEGNEYFYIFLICTCFSFLHSDWVLFAEQDYKKLL 138

Query: 567 RRAICIKAALIPIVY 611
            R + +K  L+ I+Y
Sbjct: 139 LRTLFVKGILLLIIY 153


>UniRef50_UPI0000D565E1 Cluster: PREDICTED: similar to CG11430-PB,
           isoform B; n=2; Endopterygota|Rep: PREDICTED: similar to
           CG11430-PB, isoform B - Tribolium castaneum
          Length = 320

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 419 VCIHLFQKQNFIKALPFTQSILPYIHQFVLFLIHFYHECSI*NC 550
           +C   F   +F  A   T  ++P +  FVLF +HFYH   +  C
Sbjct: 253 LCWVKFWDYSFTAATAATVIVIPVLITFVLFAVHFYHSLVVYKC 296


>UniRef50_A0M7B3 Cluster: Membrane protein; n=1; Gramella forsetii
           KT0803|Rep: Membrane protein - Gramella forsetii (strain
           KT0803)
          Length = 66

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 390 STLATFRRVLFAFIYFRNKISLRHYLLLNQYYLIFISLYCFSYIFITSVAFKTVTVEK 563
           ST+ +   ++F F ++  K+++  Y   + YY+I   + CFS   +  + F+ + ++K
Sbjct: 5   STIVSIITLIFGFAFYGEKLTINIY---DTYYIIAAEVVCFSIWLLFMIIFQLINLKK 59


>UniRef50_A5K543 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 146

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 411 RVLFAFIYFR-NKISLRHYLLLNQYYLIFIS-LYCFSYIFITSVAFKTVTVEKGRRAICI 584
           RV++ F++F  N + L++YLLL  +Y  F+S +  F + F  S     +   + R +  +
Sbjct: 62  RVIYLFLFFVCNMVMLKYYLLLMNHYSAFLSTILNFVFNFFLSAIMGVLFFSEKRDSYWL 121

Query: 585 KAALIPIV 608
              L+ IV
Sbjct: 122 LGGLLIIV 129


>UniRef50_Q7QXI5 Cluster: GLP_36_54719_58159; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_36_54719_58159 - Giardia lamblia
           ATCC 50803
          Length = 1146

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +2

Query: 365 LMLCPFRAIDACDFPSRSVCIHLFQKQN 448
           LMLCP    DA DFPSR +  HLF ++N
Sbjct: 475 LMLCPITEPDASDFPSREL-KHLFIERN 501


>UniRef50_Q97WD8 Cluster: Putative uncharacterized protein; n=1;
           Sulfolobus solfataricus|Rep: Putative uncharacterized
           protein - Sulfolobus solfataricus
          Length = 367

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 459 HYLLLNQYYLIFISLYCFSYIFITSVAFKTVTVEKGR 569
           +YL+LN  Y+IFIS Y F YI    +  K + + KG+
Sbjct: 209 NYLMLNPSYIIFIS-YTFLYIIEELIYSKGINIVKGK 244


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,260,825
Number of Sequences: 1657284
Number of extensions: 10707667
Number of successful extensions: 24470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24434
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)