Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40212
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   5.6  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   9.9  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 481 ITLYSSVCTVSHTFLSRV*HLKLLPWKKEEG 573
           ++LY S+ ++  TF+    HL  L W  E G
Sbjct: 331 LSLYGSIISIIQTFIFDRHHLYTLHWTSEMG 361


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 457 LNEILFLK*MNANRTRRKVASVDGAKGTEHQMN*IDLVR 341
           L E L  + +N  +   KVA+VDG +G E+ +  + LVR
Sbjct: 871 LIERLLSESLNREKHFIKVATVDGYQGEENDVVLLSLVR 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,373
Number of Sequences: 5004
Number of extensions: 49126
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)