Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40212
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    31   1.1  
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    29   3.3  
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969...    28   7.7  
03_05_0250 - 22394024-22394148,22394379-22394940                       28   7.7  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 17  KVRTKFVDSGSINWPCLICLDFMS--VPHLASARQTFWWKPISN 142
           K   KF +   + W  LI   +    VPHL   + +FWW+ +++
Sbjct: 594 KHMVKFYNGADLPWVKLISQSYYDSKVPHLMMNKGSFWWRDVTS 637


>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 14  FKVRTKFVDSGSINWPCLICLDFM--SVPHLASARQTFWWKPISN 142
           FK   K  +   + W  LI   +    VPHL   + +FWW+ I++
Sbjct: 558 FKHMVKLYNGVELPWVKLISQTYYVSRVPHLVLNKGSFWWRDITS 602


>03_05_0412 +
           23993452-23994068,23996249-23996350,23996799-23996994,
           23997075-23997259,23997394-23997498,23997625-23997722,
           23997832-23998067,23998314-23998382,23999768-23999833,
           24000513-24000611,24000688-24000750
          Length = 611

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 296 SSLSYRLVALVCREHPH*INLIHLMLCP 379
           SS+S   V ++C+  PH ++ + L LCP
Sbjct: 403 SSISDNGVGMICKAFPHTLSRLLLALCP 430


>03_05_0250 - 22394024-22394148,22394379-22394940
          Length = 228

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 29  KFVDSGSINWPCLICLDFMS--VPHLASARQTFWWKPISN 142
           KF     + W  LI   +    VPH    + +FWW+ I N
Sbjct: 20  KFYQGADLPWVKLIWNSYYQTKVPHRVFNKGSFWWRDIIN 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,345,909
Number of Sequences: 37544
Number of extensions: 288014
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)