Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40212
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2422| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)                28   7.9  

>SB_2422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 581 TDGPSSFFHGNSFKCYTRDKNV*ETVQTDE 492
           TDGPS +FH   FK +  D  V  TV+ DE
Sbjct: 63  TDGPSCYFHKEIFKAFP-DSKVILTVRKDE 91


>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
          Length = 923

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 80  FMSVPHLASARQTFWWKPISNRE-LVALRN*SLVCLVIIALRWKTGSLFVLHKQLATTHA 256
           F +V H+A+A +T   +  SNR+  +A      VC V+  L     S F+   +  T + 
Sbjct: 371 FTTVGHIATANKTTSNRQTSNRQNAIAPDAMRRVCRVLSMLALSPSSHFLYRTRFTTPNR 430

Query: 257 MLRKGPP 277
           ++   PP
Sbjct: 431 IVSTHPP 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,490,356
Number of Sequences: 59808
Number of extensions: 357016
Number of successful extensions: 707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)