Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40212
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 611 IHDRNESSLNTDG 573
           IH R   SLNTDG
Sbjct: 118 IHQRASFSLNTDG 130


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 173  LVCLVIIALRWKT 211
            +V +VI+ALRW++
Sbjct: 1625 VVAVVIVALRWRS 1637


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 173  LVCLVIIALRWKT 211
            +V +VI+ALRW++
Sbjct: 1621 VVAVVIVALRWRS 1633


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 459 HYLLLNQYYL 488
           H LLLN+YYL
Sbjct: 263 HKLLLNRYYL 272


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 459 HYLLLNQYYL 488
           H LLLN+YYL
Sbjct: 263 HKLLLNRYYL 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,651
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)